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berkeley_reactor_200306_planktonic_scaffold_24546

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_24546_1
Microcystis aeruginosa, Microcystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

2..11521
DNA (11520bp) protein (3840aa)
Alkaline phosphatase {ECO:0000313|EMBL:AKE63138.1}; EC=3.1.3.1 {ECO:0000313|EMBL:AKE63138.1};; TaxID=1641812 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.;" source="Microcystis aeruginosa NIES-2549.;"
Uncharacterized protein n=1 Tax=Microcystis sp. T1-4 RepID=I4IK24_9CHRO
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_24546_2
unknown

Not on your lists

11532..11780
DNA (249bp) protein (83aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_24546_3
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(11895..14507)
DNA (2613bp) protein (871aa)
40-residue YVTN family beta-propeller repeat protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XN09_9BACT
Phosphoesterase family protein
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_24546_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(14517..16091)
DNA (1575bp) protein (525aa)
type I phosphodiesterase (EC:3.-.-.-)
Type I phosphodiesterase/nucleotide pyrophosphatase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSR7_9BACT
Type I phosphodiesterase/nucleotide pyrophosphatase {ECO:0000313|EMBL:EEF57119.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_24546_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(16467..17300)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XN28_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58690.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_24546_6
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17656..19980)
DNA (2325bp) protein (775aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU000675}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU000675};; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase n=1 Tax=Bacteroides sp. CAG:598 RepID=R5C4N0_9BACE
berkeley_reactor_200306_planktonic_scaffold_24546_7
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19977..20261)
DNA (285bp) protein (95aa)
Putative membrane protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47UY7_COLP3
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AAZ25941.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio; psychroerythus).;"
berkeley_reactor_200306_planktonic_scaffold_24546_8
GWA2_Elusimicrobia_62_23_curated, Elusimicrobia, Bacteria

Not on your lists

comp(20318..21637)
DNA (1320bp) protein (440aa)
Major facilitator superfamily MFS_1 n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GHF6_NITSI
folate transporter
Tax=GWA2_Elusimicrobia_62_23_curated
berkeley_reactor_200306_planktonic_scaffold_24546_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(21666..22766)
DNA (1101bp) protein (367aa)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ald; alanine dehydrogenase (EC:1.4.1.1)
Alanine dehydrogenase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR09_9BACT
berkeley_reactor_200306_planktonic_scaffold_24546_10
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23040..25046)
DNA (2007bp) protein (669aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000362C2F0
enterotoxin
Enterotoxin {ECO:0000313|EMBL:AHX14157.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
berkeley_reactor_200306_planktonic_scaffold_24546_11
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(25071..26021)
DNA (951bp) protein (317aa)
NAD-dependent epimerase/dehydratase id=4396259 bin=GWF2_Lentisphaerae_52_8 species=Akkermansia muciniphila genus=Akkermansia taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
NAD-dependent epimerase/dehydratase
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_24546_12
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(26018..27199)
DNA (1182bp) protein (394aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036B36BA
hypothetical protein
Tax=GWF2_Lentisphaerae_50_93_curated
berkeley_reactor_200306_planktonic_scaffold_24546_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(27498..28172)
DNA (675bp) protein (225aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XA37_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF63378.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
LuxR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_24546_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(28226..31366)
DNA (3141bp) protein (1047aa)
Putative signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XA36_9BACT
Putative signal transduction histidine kinase {ECO:0000313|EMBL:EEF63377.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
two component regulator propeller/histidine kinase domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_24546_15
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31606..34098)
DNA (2493bp) protein (831aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YBQ6_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ26019.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_24546_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(34192..36426)
DNA (2235bp) protein (745aa)
Serine/threonine protein kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAK2_9BACT
Serine/threonine protein kinase {ECO:0000313|EMBL:EEF63037.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
serine/threonine protein kinase
berkeley_reactor_200306_planktonic_scaffold_24546_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(36494..37078)
DNA (585bp) protein (195aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAK3_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF63038.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ECF subfamily RNA polymerase sigma-24 factor
berkeley_reactor_200306_planktonic_scaffold_24546_18
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37220..41314)
DNA (4095bp) protein (1365aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02BY1_SOLUE
Uncharacterized protein {ECO:0000313|EMBL:EWM10057.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_24546_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(41350..42126)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAK5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF63040.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_24546_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(42150..48971)
DNA (6822bp) protein (2274aa)
Autotransporter-associated beta strand repeat protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAK4_9BACT
Autotransporter-associated beta strand repeat protein {ECO:0000313|EMBL:EEF63039.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
outer membrane autotransporter
berkeley_reactor_200306_planktonic_scaffold_24546_21
unknown

Not on your lists

comp(49546..49905)
DNA (360bp) protein (120aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_24546_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(49982..50848)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHD1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60766.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_24546_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

51170..52726
DNA (1557bp) protein (519aa)
Sulfotransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XA43_9BACT
Sulfotransferase {ECO:0000313|EMBL:EEF63384.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
sulfotransferase
berkeley_reactor_200306_planktonic_scaffold_24546_24
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

53121..57272
DNA (4152bp) protein (1384aa)
Immunoglobulin I-set domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XA44_9BACT
Immunoglobulin I-set domain protein {ECO:0000313|EMBL:EEF63385.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Immunoglobulin V-set domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_24546_25
Rhodopirellula sallentina, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(57553..58434)
DNA (882bp) protein (294aa)
Transcriptional regulator, AraC family n=1 Tax=Rhodopirellula sallentina SM41 RepID=M5U1F3_9PLAN
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EMI55277.1}; TaxID=1263870 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sallentina SM41.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_24546_26
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

58578..59660
DNA (1083bp) protein (361aa)
Oxidoreductase domain protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S6I0_PEDSD
oxidoreductase domain-containing protein
Oxidoreductase domain protein {ECO:0000313|EMBL:ADY51056.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
berkeley_reactor_200306_planktonic_scaffold_24546_27
Tamlana nanhaiensis, Tamlana, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

59657..60805
DNA (1149bp) protein (383aa)
hypothetical protein n=1 Tax=Rubritalea marina RepID=UPI000379884C
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJD34323.1}; TaxID=1382798 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tamlana.;" source="Tamlana nanhaiensis.;"
family 1 extracellular solute-binding protein
berkeley_reactor_200306_planktonic_scaffold_24546_28
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

60810..61250
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Paenibacillus mucilaginosus (strain KNP414) RepID=F8F954_PAEMK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI42982.1}; TaxID=1036673 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus mucilaginosus (strain KNP414).;"
berkeley_reactor_200306_planktonic_scaffold_24546_29
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

61247..62389
DNA (1143bp) protein (381aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036443F3
carnitine dehydratase
Carnitine dehydratase {ECO:0000313|EMBL:AFH62993.1}; TaxID=997761 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus mucilaginosus K02.;"
berkeley_reactor_200306_planktonic_scaffold_24546_30
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

62398..63462
DNA (1065bp) protein (355aa)
RhaT l-rhamnose-proton symport 2 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNK9_NIAKG
RhaT l-rhamnose-proton symport 2
Tax=RBG_16_Aminicenantes_63_16_curated
Displaying items 1-30 of 40 in total

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