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berkeley_reactor_200306_planktonic_scaffold_23420_64

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(67112..68833)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigA n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH89_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 68.6
  • Coverage: 538.0
  • Bit_score: 733
  • Evalue 1.60e-208
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.6
  • Coverage: 538.0
  • Bit_score: 733
  • Evalue 2.20e-208
RpoD family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 55.6
  • Coverage: 572.0
  • Bit_score: 576
  • Evalue 5.30e-162

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1722
ATGTCACAATCCAAGCCTCGCAATCAGAATTCCGCGACCCACGCCGCGAATATTTCCCCCGCCAATCCGGCCGTGCCTGCCCCGCCCGCCAGCCGCGAAGCCGAGCTGGCCGAGAAGATCAAGGAACTGGTCCTGCTCGCCAAGGAACAGGGCAACCTGACGTTCAGCGACATCAGCGAAGCCCTGCCCGAGCACCTGTCGGCGCCGGAAGATCTCGACGAAATTTTTGCCAAGCTGCGCGAGCTGGAAATTGAAATCGTGGACCAGGCGGAGGTGGATGCGGTCAAGCCCGCCGACGACGAGGAGGAGGACACGCGGCATTTGGATTCGCTCGACGATCCGGTGCGCATGTATCTCAAGCAGATGGGCGCCGTGCCGCTGCTGACCCGCGAGCAGGAGGTGGAGATTTCCAAACGCATCGAGAAGGCGGAAAACGAGCTGCGCGAGGTCGTTTACGGATTCGGCTTTGCCGGCAAAGAACACATCGCCCTCGCGGAAAAGCTGCTGGCCGACCCGCCGCGGGAACGCTTCGACCGCGTGGTGCTGGACAAAAAGGTCGCCAGCCGCGAAACCCATCTCAAAACGCTGTCCAAACTGGTCGGCCGCGTGCGGGAGCTGGATGTGGATGTGGACCGGCACTTCAACGCCTGGCGGGACGCGCATCAGAACGTGAAGCGAAACCGGGAGCATGATGAATTTCTCAAGGCCGACAAAAAGCTGCAGGCCTCCTTTCCCAAATTCTGTTTCAAACAGAAAGTCGTCGAGGAAATGACGCTGGTGGCGGAAAACATCCATGAAAAACTGCGCTACAGCCTGCGGGCGCTGAATGATTCGCAGCACCAGCGCGAATCCACCGCCCAGAAACATCTGGTCGAGGCGGAACAACAAAAGATTCGCGCGCTGGAGGAATTCGTCCGCATGCCGTCCGGGGATTTTCTGCTGGCCTTTGACCGCCTCCGCGACGCCGCCGCCCGCGCCCTGCAGGCCAAGACCGAAATGGTGGAAGCCAACCTGCGCCTCGTCATTTCCATCGCCAAAAAATACACCAACCGCGGGCTTTCATTTCTCGACCTGATCCAGGAAGGCAACATGGGGTTGATGAAGGCGGTCGAAAAATTTGAATACCGTCGCGGCTACAAGTTTTCGACCTACGCCACCTGGTGGATTCGCCAGGCCATCACCCGCAGCATCGCCGACCAGGCGCGCACCATCCGCATTCCGGTGCACATGATCGAAATCATCAACAAACTGCTGCGCGCGCAGAAAAAGCTGTTGCAGGAACTCGGTCGTGAAGCCACGCCGGAGGAAATCGCCGAGGAAATGCAGCTTCCCGTCTTCCGCGTGCGCTCCATTCTGAAGATGGCGCAGCAACCGGTTTCGTTGCAGTCGCCCGTGGGCGACGGCGACGAGGCGAGCTTTGGCGACTTCATTGAGGACAAGGCCGCCGACAATCCGCTCGACATCACCAGCTTCAGCCTGCTGAAGGACCGCATGAGCGACGTGTTGTGCAGTCTGACCGAGCGCGAACGGCAGGTTTTGGAACTCCGGTTCGGCCTGGGCGACGGCAACGCCCGCACCCTGGAGGAAGTCGGCCAGCAATTCCGCGTCACGCGCGAACGCATCCGGCAGATCGAAGCCAAGGCCCTCCGCAAAATGCGTCACCCCACCCGGCTCAAGCTGCTGAATGGTTTTCTGGAAATGGAAAACCTGATGCCGGAATAA
PROTEIN sequence
Length: 574
MSQSKPRNQNSATHAANISPANPAVPAPPASREAELAEKIKELVLLAKEQGNLTFSDISEALPEHLSAPEDLDEIFAKLRELEIEIVDQAEVDAVKPADDEEEDTRHLDSLDDPVRMYLKQMGAVPLLTREQEVEISKRIEKAENELREVVYGFGFAGKEHIALAEKLLADPPRERFDRVVLDKKVASRETHLKTLSKLVGRVRELDVDVDRHFNAWRDAHQNVKRNREHDEFLKADKKLQASFPKFCFKQKVVEEMTLVAENIHEKLRYSLRALNDSQHQRESTAQKHLVEAEQQKIRALEEFVRMPSGDFLLAFDRLRDAAARALQAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIEIINKLLRAQKKLLQELGREATPEEIAEEMQLPVFRVRSILKMAQQPVSLQSPVGDGDEASFGDFIEDKAADNPLDITSFSLLKDRMSDVLCSLTERERQVLELRFGLGDGNARTLEEVGQQFRVTRERIRQIEAKALRKMRHPTRLKLLNGFLEMENLMPE*