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berkeley_reactor_200306_planktonic_scaffold_23420

Search features with annotation key words

Displaying items 61-90 of 345 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_23420_60
unknown

Not on your lists

comp(64847..65530)
DNA (684bp) protein (228aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_61
GWB2_Deltaproteobacteria_55_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65655..66296)
DNA (642bp) protein (214aa)
Putative uncharacterized protein id=1717004 bin=GWB2_Proteobacteria_55_19 species=Burkholderia sp. YI23 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
hypothetical protein
Tax=GWB2_Deltaproteobacteria_55_19_curated
berkeley_reactor_200306_planktonic_scaffold_23420_62
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66409..66726)
DNA (318bp) protein (106aa)
Plasmid maintenance system antidote protein, XRE family n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAH1_GEOUR
XRE family plasmid maintenance system antidote protein
Tax=RBG_13_Deltaproteobacteria_52_11b_curated
berkeley_reactor_200306_planktonic_scaffold_23420_63
RBG_13_Aminicenantes_63_10_curated, Aminicenantes, Bacteria

Not on your lists

comp(66723..67070)
DNA (348bp) protein (116aa)
HicB family protein n=1 Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZTI9_DESOH
HicB family protein
Tax=RBG_13_Aminicenantes_63_10_curated
berkeley_reactor_200306_planktonic_scaffold_23420_64
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(67112..68833)
DNA (1722bp) protein (574aa)
RNA polymerase sigma factor SigA n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH89_9BACT
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
RpoD family RNA polymerase sigma factor
berkeley_reactor_200306_planktonic_scaffold_23420_65
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(68928..70187)
DNA (1260bp) protein (420aa)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-)
Three-deoxy-D-manno-octulosonic-acid transferase domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBG0_9BACT
Three-deoxy-D-manno-octulosonic-acid transferase domain protein {ECO:0000313|EMBL:EEF62845.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_23420_66
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70511..71902
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QKH9_AZOSU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV27718.1}; Flags: Precursor;; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
berkeley_reactor_200306_planktonic_scaffold_23420_67
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(71917..73173)
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00036B16AF
sodium:proton antiporter
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_23420_68
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

73378..76995
DNA (3618bp) protein (1206aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00036E5DD9
transcription-repair coupling factor
berkeley_reactor_200306_planktonic_scaffold_23420_69
Cyanothece sp. CCY0110, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

77040..77729
DNA (690bp) protein (230aa)
GAF n=1 Tax=Cyanothece sp. CCY0110 RepID=A3ITR8_9CHRO
GAF {ECO:0000313|EMBL:EAZ90134.1}; TaxID=391612 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. CCY0110.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_70
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(77756..79417)
DNA (1662bp) protein (554aa)
Pseudouridine synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS18_9BACT
Pseudouridine synthase {ECO:0000313|EMBL:EEF57350.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_71
unknown

Not on your lists

comp(79592..79693)
DNA (102bp) protein (34aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_72
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(79895..80446)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHD1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60766.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
prepilin-type N-terminal cleavage/methylation domain
berkeley_reactor_200306_planktonic_scaffold_23420_73

Not on your lists

80471..81004
DNA (534bp) protein (178aa)
Marine sediment metagenome DNA, contig: S01H4_S13696 {ECO:0000313|EMBL:GAG93757.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
berkeley_reactor_200306_planktonic_scaffold_23420_74
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

81001..81714
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDI5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62131.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_23420_75
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

81757..82845
DNA (1089bp) protein (363aa)
DNA replication and repair protein RecF n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRI4_9BACT
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
recF; DNA repair and genetic recombination protein
berkeley_reactor_200306_planktonic_scaffold_23420_76
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

83017..83823
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI0003820FF0
Uncharacterized protein {ECO:0000313|EMBL:EEF60158.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
prepilin-type N-terminal cleavage/methylation domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_23420_77
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

83921..84886
DNA (966bp) protein (322aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophanyl-tRNA synthetase {ECO:0000313|EMBL:ACB75392.1}; EC=6.1.1.2 {ECO:0000313|EMBL:ACB75392.1};; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Tryptophanyl-tRNA synthetase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZMW4_OPITP
berkeley_reactor_200306_planktonic_scaffold_23420_78
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

85105..86346
DNA (1242bp) protein (414aa)
rRNA (guanine-N(2)-)-methyltransferase (EC:2.1.1.52)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XI43_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60536.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_23420_79
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(86409..87380)
DNA (972bp) protein (324aa)
KpsF/GutQ family protein {ECO:0000313|EMBL:EEF57542.1}; EC=5.3.1.13 {ECO:0000313|EMBL:EEF57542.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
KpsF/GutQ family protein (EC:5.3.1.13)
KpsF/GutQ family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRH1_9BACT
berkeley_reactor_200306_planktonic_scaffold_23420_80
Methylomonas sp. 16a, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

87499..89022
DNA (1524bp) protein (508aa)
phytoene desaturase; K10027 phytoene desaturase [EC:1.3.99.26 1.3.99.28 1.3.99.29 1.3.99.31] id=7718544 bin=BACIGN_2 species=Methylomonas methanica genus=Methylomonas taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP
Diapophytoene desaturase {ECO:0000313|EMBL:AAX46183.1}; TaxID=318114 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas sp. 16a.;"
phytoene desaturase
berkeley_reactor_200306_planktonic_scaffold_23420_81
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(89053..89550)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Paenibacillus daejeonensis RepID=UPI00038244DA
hypothetical protein
Tax=BJP_IG2069_Ignavibacteriae_38_11
berkeley_reactor_200306_planktonic_scaffold_23420_82
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(89540..90625)
DNA (1086bp) protein (362aa)
Glycosyl transferase family 2 n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RT66_ALLVD
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ADC62375.1}; TaxID=572477 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
berkeley_reactor_200306_planktonic_scaffold_23420_83
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(90622..92103)
DNA (1482bp) protein (494aa)
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI000374665C
phytoene desaturase
Tax=BJP_IG2069_Ignavibacteriae_38_11
berkeley_reactor_200306_planktonic_scaffold_23420_84
unknown

Not on your lists

comp(92093..92887)
DNA (795bp) protein (265aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_85
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

92933..94315
DNA (1383bp) protein (461aa)
Aldehyde dehydrogenase n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YSJ5_9FIRM
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
NAD-dependent aldehyde dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_23420_86
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(94773..95756)
DNA (984bp) protein (328aa)
Putative UV damage endonuclease {ECO:0000313|EMBL:EAQ81339.1}; EC=3.-.-.- {ECO:0000313|EMBL:EAQ81339.1};; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
Putative UV damage endonuclease n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQ66_9PLAN
UV damage endonuclease UvdE
berkeley_reactor_200306_planktonic_scaffold_23420_87
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(95722..96474)
DNA (753bp) protein (251aa)
oxidoreductase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4DBD
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) {ECO:0000313|EMBL:AHY46437.1}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
berkeley_reactor_200306_planktonic_scaffold_23420_88
unknown

Not on your lists

comp(96471..96677)
DNA (207bp) protein (69aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_89
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(96682..97641)
DNA (960bp) protein (320aa)
Transcriptional regulator, MerR family n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNG1_OPITP
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ACB74395.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Displaying items 61-90 of 345 in total

View Taxonomy