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berkeley_reactor_200306_planktonic_scaffold_23420

Search features with annotation key words

Displaying items 1-30 of 345 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_23420_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(124..705)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VU93_POLNA
Uncharacterized protein {ECO:0000313|EMBL:KIO48757.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_2
unknown

Not on your lists

comp(702..893)
DNA (192bp) protein (64aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_3
BJP_IG2157_Anaerolineales_55_23, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

1177..1767
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Saccharibacillus kuerlensis RepID=UPI00037DDAFA
Tax=BJP_IG2157_Anaerolineales_55_23
berkeley_reactor_200306_planktonic_scaffold_23420_4
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

1984..3645
DNA (1662bp) protein (554aa)
Beta-xylosidase n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6ATM6_9BACT
Beta-xylosidase {ECO:0000313|EMBL:EIP98367.1}; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
xylan beta-1,4-xylosidase
berkeley_reactor_200306_planktonic_scaffold_23420_5
Rhodopirellula sp. SWK7, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

3649..5451
DNA (1803bp) protein (601aa)
Transporter, SSS family protein n=1 Tax=Rhodopirellula sp. SWK7 RepID=M5T426_9PLAN
Transporter, SSS family protein {ECO:0000313|EMBL:EMI43855.1}; TaxID=595460 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sp. SWK7.;"
sodium/glucose cotransporter
berkeley_reactor_200306_planktonic_scaffold_23420_6
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

5453..6541
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X7J0_9PORP
beta-glucanase precursor
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_23420_7
Caldicellulosiruptor saccharolyticus, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

6543..8669
DNA (2127bp) protein (709aa)
Uncharacterized protein n=1 Tax=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) RepID=A4XN06_CALS8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP68291.1}; TaxID=351627 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 /; Tp8T 6331).;"
berkeley_reactor_200306_planktonic_scaffold_23420_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(8685..11123)
DNA (2439bp) protein (813aa)
DEAD_2 domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAU8_9BACT
DEAD_2 domain protein {ECO:0000313|EMBL:EEF63133.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA helicase, Rad3
berkeley_reactor_200306_planktonic_scaffold_23420_9
GWF2_Elusimicrobia_62_30_curated, Elusimicrobia, Bacteria

Not on your lists

comp(11120..11881)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746320
excinuclease ABC subunit C
Tax=GWF2_Elusimicrobia_62_30_curated
berkeley_reactor_200306_planktonic_scaffold_23420_10
unknown

Not on your lists

comp(12044..12301)
DNA (258bp) protein (86aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_11
unknown

Not on your lists

12450..12695
DNA (246bp) protein (82aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

12819..15398
DNA (2580bp) protein (860aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCU4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62290.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_23420_13
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15539..16843
DNA (1305bp) protein (435aa)
Putative uncharacterized protein id=1727411 bin=GWB2_Pelobacter_53_15 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACH40515.1}; TaxID=404380 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622).;"
berkeley_reactor_200306_planktonic_scaffold_23420_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

16886..17938
DNA (1053bp) protein (351aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA-directed DNA polymerase (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9L4_9BACT
berkeley_reactor_200306_planktonic_scaffold_23420_15
unknown

Not on your lists

18054..18788
DNA (735bp) protein (245aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_16
unknown

Not on your lists

19078..19800
DNA (723bp) protein (241aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_17
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20050..20865
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00037398B2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF16229.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_23420_18
BJP_08E140C01_Falkowbacteria_33_19, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

20920..22854
DNA (1935bp) protein (645aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQM0_9BACT
hypothetical protein
Tax=BJP_08E140C01_Falkowbacteria_33_19
berkeley_reactor_200306_planktonic_scaffold_23420_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(23158..23733)
DNA (576bp) protein (192aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Peptide deformylase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGP3_9BACT
peptide deformylase
berkeley_reactor_200306_planktonic_scaffold_23420_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(23761..24681)
DNA (921bp) protein (307aa)
ParB-like partition protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGP1_9BACT
ParB-like partition protein {ECO:0000313|EMBL:EEF61092.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Spo0J4; transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_23420_21
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

24939..25346
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGP0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61091.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_23420_22
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25449..26354
DNA (906bp) protein (302aa)
Cell division inhibitor n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9Q8Z7_9DELT
Cell division inhibitor {ECO:0000313|EMBL:EPX57824.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
sulA; cell division inhibitor
berkeley_reactor_200306_planktonic_scaffold_23420_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

26358..26726
DNA (369bp) protein (123aa)
CoA-binding domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQF0_9BACT
CoA-binding domain protein {ECO:0000313|EMBL:EEF57974.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
CoA-binding domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_23420_24
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(26845..29676)
DNA (2832bp) protein (944aa)
FAD linked oxidase domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCW3_9BACT
FAD linked oxidase domain protein {ECO:0000313|EMBL:EEF62309.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
FAD/FMN-dependent dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_23420_25
unknown

Not on your lists

29770..30309
DNA (540bp) protein (180aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_26
unknown

Not on your lists

30641..31492
DNA (852bp) protein (284aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_27
unknown

Not on your lists

31519..31608
DNA (90bp) protein (30aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_28
unknown

Not on your lists

31663..32640
DNA (978bp) protein (326aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_29
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(32675..33523)
DNA (849bp) protein (283aa)
Integrase catalytic region n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEB0_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC81626.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_23420_30
Leptospira inadai, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(33520..33870)
DNA (351bp) protein (117aa)
Transposase n=1 Tax=Leptospira inadai serovar Lyme str. 10 RepID=V6HR16_9LEPT
Transposase {ECO:0000313|EMBL:EQA34914.1}; TaxID=1049790 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira inadai serovar Lyme str. 10.;"
Displaying items 1-30 of 345 in total

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