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berkeley_reactor_200306_planktonic_scaffold_23420

Search features with annotation key words

Displaying items 91-120 of 345 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_23420_90
unknown

Not on your lists

97805..97978
DNA (174bp) protein (58aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_91
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

97975..98475
DNA (501bp) protein (167aa)
Beta-Ig-H3/fasciclin n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R507_PIRSD
beta-Ig-H3/fasciclin
Beta-Ig-H3/fasciclin {ECO:0000313|EMBL:ADB18969.1}; Flags: Precursor;; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
berkeley_reactor_200306_planktonic_scaffold_23420_92
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

98601..99014
DNA (414bp) protein (138aa)
thiol-disulfide oxidoreductase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744C70
Thiol-disulfide oxidoreductase {ECO:0000313|EMBL:KHD33419.1}; TaxID=1538553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas denitrificans.;"
thiol-disulfide oxidoreductase
berkeley_reactor_200306_planktonic_scaffold_23420_93
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

99196..99888
DNA (693bp) protein (231aa)
ABC transporter n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745824
ABC transporter
ABC transporter {ECO:0000313|EMBL:AKC82450.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_23420_94
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

99891..102548
DNA (2658bp) protein (886aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745825
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC82449.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_23420_95
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

102545..104005
DNA (1461bp) protein (487aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745826
Putative uncharacterized protein {ECO:0000313|EMBL:EDY83916.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_96
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(104041..104742)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-I21 RepID=UPI00035EE061
Crp/Fnr family transcriptional regulator
Putative Crp/Fnr-family transcriptional regulator {ECO:0000313|EMBL:CAJ65179.1}; TaxID=326424 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
berkeley_reactor_200306_planktonic_scaffold_23420_97
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(104981..105883)
DNA (903bp) protein (301aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Ralstonia pickettii (strain 12D) RepID=C6BGI7_RALP1
short-chain dehydrogenase/reductase SDR
Oxidoreductase {ECO:0000313|EMBL:KHK51979.1}; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. A12.;"
berkeley_reactor_200306_planktonic_scaffold_23420_98
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(106003..107064)
DNA (1062bp) protein (354aa)
pheA; p-protein, bifunctional chorismate mutase/prephenate dehydratase (EC:4.2.1.51 5.4.99.5)
Chorismate mutase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRG9_9BACT
Chorismate mutase {ECO:0000313|EMBL:EEF57540.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_23420_99
GWF2_Verrucomicrobia_51_19_curated, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(107111..107419)
DNA (309bp) protein (103aa)
Putative uncharacterized protein id=4034885 bin=GWF2_Verrucomicrobia_51_19 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Verrucomicrobia_51_19 organism_group=Verrucomicrobia organism_desc=Good +
Tax=GWF2_Verrucomicrobia_51_19_curated
berkeley_reactor_200306_planktonic_scaffold_23420_100
unknown

Not on your lists

comp(107416..107694)
DNA (279bp) protein (93aa)
Prevent-host-death family protein n=2 Tax=unclassified Opitutaceae RepID=H1IU70_9BACT
prevent-host-death protein
berkeley_reactor_200306_planktonic_scaffold_23420_101
GWF2_Lentisphaerae_38_69_curated, Lentisphaerae, Bacteria

Not on your lists

107774..108025
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=unclassified Verrucomicrobia (miscellaneous) RepID=UPI0003818CF8
30S ribosomal protein S21
Tax=GWF2_Lentisphaerae_38_69_curated
berkeley_reactor_200306_planktonic_scaffold_23420_102
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

108177..109037
DNA (861bp) protein (287aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMC8_9BACT
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:EEF58970.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
xylose isomerase domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_23420_103
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

109109..110542
DNA (1434bp) protein (478aa)
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase {ECO:0000313|EMBL:EEF58969.1}; EC=2.7.7.72 {ECO:0000313|EMBL:EEF58969.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMC7_9BACT
metal dependent phosphohydrolase
berkeley_reactor_200306_planktonic_scaffold_23420_104
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

110535..110831
DNA (297bp) protein (99aa)
Recombination inhibitory protein MutS2 id=2027108 bin=GWB2_Nitrospirae_rel_47_37 species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
DNA mismatch repair protein MutS
Tax=RBG_13_Deltaproteobacteria_52_11_curated
berkeley_reactor_200306_planktonic_scaffold_23420_105
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(110828..111514)
DNA (687bp) protein (229aa)
Putative uncharacterized protein id=4709772 bin=GWC2_Bacteroidetes_40_22 species=Dysgonomonas gadei genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
hypothetical protein
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
berkeley_reactor_200306_planktonic_scaffold_23420_106
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(111535..112617)
DNA (1083bp) protein (361aa)
putative lipopolysaccharide heptosyltransferase II (EC:2.4.-.-)
Lipopolysaccharide heptosyltransferase II n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSA4_9BACT
Lipopolysaccharide heptosyltransferase II {ECO:0000313|EMBL:EEF57274.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_23420_107
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(112614..113336)
DNA (723bp) protein (241aa)
Metallophosphoesterase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSA5_9BACT
Metallophosphoesterase {ECO:0000313|EMBL:EEF57275.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
metallophosphoesterase
berkeley_reactor_200306_planktonic_scaffold_23420_108
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(113340..113597)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00037D393C
Acylphosphatase {ECO:0000313|EMBL:EEF57276.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
acylphosphatase
berkeley_reactor_200306_planktonic_scaffold_23420_109
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

113818..115746
DNA (1929bp) protein (643aa)
Type IV pilus assembly protein PilM n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEZ8_9BACT
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:EEF61496.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cell division protein FtsA
berkeley_reactor_200306_planktonic_scaffold_23420_110
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

115748..116791
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEZ9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61497.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_111
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

116793..117578
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF00_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61498.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_23420_112
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

117632..120004
DNA (2373bp) protein (791aa)
Type II and III secretion system protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF01_9BACT
Type II and III secretion system protein {ECO:0000313|EMBL:EEF61499.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_113
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

120024..120683
DNA (660bp) protein (220aa)
Type II and III secretion system protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF01_9BACT
Type II and III secretion system protein {ECO:0000313|EMBL:EEF61499.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
type II and III secretion system protein
berkeley_reactor_200306_planktonic_scaffold_23420_114
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

120800..121564
DNA (765bp) protein (255aa)
DNA polymerase I (EC:2.7.7.7)
DNA polymerase I id=4214199 bin=GWF2_Lentisphaerae_57_35 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
Tax=GWF2_Lentisphaerae_57_35_curated
berkeley_reactor_200306_planktonic_scaffold_23420_115
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

121678..123648
DNA (1971bp) protein (657aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF02_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61500.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_116
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

123658..125991
DNA (2334bp) protein (778aa)
Ig family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF03_9BACT
Ig family protein {ECO:0000313|EMBL:EEF61501.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative hemagglutinin-related protein, Type V secretion pathway
berkeley_reactor_200306_planktonic_scaffold_23420_117
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

125988..129371
DNA (3384bp) protein (1128aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF04_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61502.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_23420_118
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

129425..138106
DNA (8682bp) protein (2894aa)
Ig family protein {ECO:0000313|EMBL:ACB74442.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Putative uncharacterized protein id=3098209 bin=GWF2_Bacteroidetes_43_63 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Bacteroidetes_43_63 organism_group=Bacteroidetes organism_desc=a77
Calx-beta domain-containing protein,putative calcium-binding protein
berkeley_reactor_200306_planktonic_scaffold_23420_119
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

138113..140650
DNA (2538bp) protein (846aa)
Conserved repeat domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DB66_9BACT
Conserved repeat domain protein {ECO:0000313|EMBL:EDY16344.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Sedolisin
Displaying items 91-120 of 345 in total

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