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berkeley_reactor_200306_planktonic_scaffold_23420

Search features with annotation key words

Displaying items 121-150 of 345 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_23420_120
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

140668..141264
DNA (597bp) protein (199aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Dephospho-CoA kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF05_9BACT
coaE; dephospho-CoA kinase
berkeley_reactor_200306_planktonic_scaffold_23420_121
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(141979..145554)
DNA (3576bp) protein (1192aa)
Immunoglobulin V-set domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIC4_9BACT
Immunoglobulin V-set domain protein {ECO:0000313|EMBL:EEF60385.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_122
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

145833..148031
DNA (2199bp) protein (733aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF06_9BACT
1,4-alpha-glucan-branching protein
berkeley_reactor_200306_planktonic_scaffold_23420_123
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

148139..148891
DNA (753bp) protein (251aa)
Exodeoxyribonuclease III Xth {ECO:0000313|EMBL:EEF62213.1}; EC=4.2.99.18 {ECO:0000313|EMBL:EEF62213.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Exodeoxyribonuclease III Xth n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDR7_9BACT
exodeoxyribonuclease III
berkeley_reactor_200306_planktonic_scaffold_23420_124
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

149001..150473
DNA (1473bp) protein (491aa)
Radical SAM domain protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZW83_OPITP
radical SAM domain-containing protein
Radical SAM domain protein {ECO:0000313|EMBL:ACB76835.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_23420_125
R_RIF_OP11_01_40_20, RIF-OP11-1, Microgenomates, Bacteria

Not on your lists

comp(150574..151017)
DNA (444bp) protein (148aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_01_40_20_curated
berkeley_reactor_200306_planktonic_scaffold_23420_126
unknown

Not on your lists

comp(151245..151958)
DNA (714bp) protein (238aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_127
R_Methylophilales_57_10, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

152140..152403
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Methylophilus methylotrophus RepID=UPI000363B40A
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Methylophilales_57_10_curated
berkeley_reactor_200306_planktonic_scaffold_23420_128
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

152422..153705
DNA (1284bp) protein (428aa)
hypothetical protein n=1 Tax=Duganella zoogloeoides RepID=UPI000368B927
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC83382.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_23420_129
unknown

Not on your lists

comp(153896..154219)
DNA (324bp) protein (108aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_130
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

154832..155389
DNA (558bp) protein (186aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRZ7_OPITP
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACB74673.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_23420_131
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

155432..157633
DNA (2202bp) protein (734aa)
Serine/threonine protein kinase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRZ8_OPITP
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:ACB74674.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_23420_132
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

158101..165117
DNA (7017bp) protein (2339aa)
Autotransporter-associated beta strand repeat protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAK4_9BACT
Autotransporter-associated beta strand repeat protein {ECO:0000313|EMBL:EEF63039.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
conserved protein of unknown function; RTX toxins and related Ca2+-binding domain
berkeley_reactor_200306_planktonic_scaffold_23420_133
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

165252..166085
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI0003820FF0
prepilin-type N-terminal cleavage/methylation domain
Tax=RBG_16_Planctomycetes_55_9_curated
berkeley_reactor_200306_planktonic_scaffold_23420_134
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

166461..171905
DNA (5445bp) protein (1815aa)
coagulation factor 5/8 type domain-containing protein (EC:2.7.10.1)
Ricin B lectin n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYT0_9BACT
Ricin B lectin {ECO:0000313|EMBL:EDY20621.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_23420_135
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

171919..174888
DNA (2970bp) protein (990aa)
alpha-L-fucosidase (EC:3.2.1.51)
Alpha-L-fucosidase id=2692626 bin=GWF2_Lentisphaerae_49_21 species=Fibrella aestuarina genus=Fibrella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
Tax=RBG_13_Planctomycetes_60_9_curated
berkeley_reactor_200306_planktonic_scaffold_23420_136
Actinoplanes missouriensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

174899..176341
DNA (1443bp) protein (481aa)
Uncharacterized protein n=1 Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0H388_ACTM4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL87475.1}; TaxID=512565 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64; / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431).;"
berkeley_reactor_200306_planktonic_scaffold_23420_137
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

176368..177432
DNA (1065bp) protein (355aa)
Carbohydrate binding family 6 n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TF24_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KEZ21102.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
endoglucanase
berkeley_reactor_200306_planktonic_scaffold_23420_trna_2
unknown

Not on your lists

177768..177842
DNA (75bp)
transferRNA Pro
berkeley_reactor_200306_planktonic_scaffold_23420_138
Candidatus Magnetobacterium bavaricum, Candidatus Magnetobacterium, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

178241..178954
DNA (714bp) protein (238aa)
CHAP domain./Lectin C-type domain n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E4F0_9FIRM
Secreted protein containing C-type lectin domain protein {ECO:0000313|EMBL:KJU84923.1}; TaxID=29290 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Candidatus Magnetobacterium.;" source="Candidatus Magnetobacterium bavaricum.;"
CHAP domain./Lectin C-type domain.
berkeley_reactor_200306_planktonic_scaffold_23420_139
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

179170..180018
DNA (849bp) protein (283aa)
RNA polymerase sigma factor n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R2Z3_PIRSD
ECF subfamily RNA polymerase sigma-24 subunit
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
berkeley_reactor_200306_planktonic_scaffold_23420_140
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(180340..181107)
DNA (768bp) protein (256aa)
short-chain dehydrogenase n=1 Tax=Nodosilinea nodulosa RepID=UPI0002FB24B7
short-chain dehydrogenase/reductase SDR
Oxidoreductase {ECO:0000313|EMBL:KIJ72967.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
berkeley_reactor_200306_planktonic_scaffold_23420_141
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

181251..182159
DNA (909bp) protein (303aa)
Transcriptional regulator, LysR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ57_9BACT
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EEF60095.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
transcriptional regulator, LysR family
berkeley_reactor_200306_planktonic_scaffold_23420_142
Methylophilaceae bacterium 11, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

182581..182979
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Methylotenera sp. 1P/1 RepID=UPI00037B33EB
Uncharacterized protein {ECO:0000313|EMBL:EUJ09364.1}; TaxID=1101195 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium 11.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_143
R_RIF_OD1_09_44_41, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

183274..184290
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T1BWL8_9ZZZZ
phage protein
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_09_44_41_curated
berkeley_reactor_200306_planktonic_scaffold_23420_144
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(184529..187417)
DNA (2889bp) protein (963aa)
Glycine dehydrogenase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00711}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00711};; Glycine cleavage system P-protein {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine decarboxylase {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|HAMAP-Rule:MF_00711}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Glycine dehydrogenase (decarboxylating) n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGH7_9BACT
glycine dehydrogenase, decarboxylating
berkeley_reactor_200306_planktonic_scaffold_23420_145
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

187652..190171
DNA (2520bp) protein (840aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA gyrase subunit B n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGG8_9BACT
gyrB; DNA gyrase subunit B
berkeley_reactor_200306_planktonic_scaffold_23420_146
unknown

Not on your lists

190186..190545
DNA (360bp) protein (120aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_147
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

190551..190979
DNA (429bp) protein (143aa)
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_23420_148
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


190994..193663
DNA (2670bp) protein (890aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA gyrase subunit A n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGG7_9BACT
gyrA; DNA gyrase subunit A
Displaying items 121-150 of 345 in total

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