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berkeley_reactor_200306_planktonic_scaffold_23420

Search features with annotation key words

Displaying items 151-180 of 345 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_23420_149
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

193920..194441
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPY5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58082.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_23420_150
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

194481..195539
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSA1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57271.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_151
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

195689..196528
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL71_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59422.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_152
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(196591..197295)
DNA (705bp) protein (235aa)
pdxH1; pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=1262456 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum FQY_4.;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase 1 n=3 Tax=Ralstonia solanacearum RepID=PDXH1_RALSO
berkeley_reactor_200306_planktonic_scaffold_23420_153
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(197297..197851)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XII9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60450.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_154
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

198358..198657
DNA (300bp) protein (100aa)
Histone family protein DNA-binding protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSG3_9BACT
Histone family protein DNA-binding protein {ECO:0000313|EMBL:EEF57228.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
histone family protein DNA-binding protein
berkeley_reactor_200306_planktonic_scaffold_23420_155
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


198778..200016
DNA (1239bp) protein (413aa)
Histidine--tRNA ligase {ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|SAAS:SAAS00043629};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Histidyl-tRNA synthetase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSG4_9BACT
Histidyl-tRNA synthetase
berkeley_reactor_200306_planktonic_scaffold_23420_156
unknown

Not on your lists

200359..200901
DNA (543bp) protein (181aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_157
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(201662..202594)
DNA (933bp) protein (311aa)
Transcriptional regulator n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6ATP1_9BACT
Transcriptional regulator {ECO:0000313|EMBL:EIP98382.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
LysR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_23420_158
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

202741..204033
DNA (1293bp) protein (431aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6ATP2_9BACT
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:EIP98383.1}; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
nitrate ABC transporter ATP-binding protein
berkeley_reactor_200306_planktonic_scaffold_23420_159
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

204026..205345
DNA (1320bp) protein (440aa)
Urea ABC transporter, urea binding protein n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6ATP3_9BACT
Urea ABC transporter, urea binding protein {ECO:0000313|EMBL:EIP98384.1}; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
urea ABC transporter urea binding protein
berkeley_reactor_200306_planktonic_scaffold_23420_160
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

205443..206366
DNA (924bp) protein (308aa)
Urea ABC transporter, permease protein UrtB n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6ATP4_9BACT
Urea ABC transporter, permease protein UrtB {ECO:0000313|EMBL:EIP98385.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
urea ABC transporter permease
berkeley_reactor_200306_planktonic_scaffold_23420_161
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

206389..207549
DNA (1161bp) protein (387aa)
Urea ABC transporter, permease protein UrtC n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6ATP5_9BACT
Urea ABC transporter, permease protein UrtC {ECO:0000313|EMBL:EIP98386.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
Urea ABC transporter, permease protein UrtC
berkeley_reactor_200306_planktonic_scaffold_23420_162
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

207546..208289
DNA (744bp) protein (248aa)
Urea ABC transporter, ATP-binding protein UrtD n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6ATP6_9BACT
Urea ABC transporter, ATP-binding protein UrtD {ECO:0000313|EMBL:EIP98387.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
ABC transporter related
berkeley_reactor_200306_planktonic_scaffold_23420_163
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

208300..208989
DNA (690bp) protein (230aa)
Urea ABC transporter, ATP-binding protein UrtE n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6ATP7_9BACT
Urea ABC transporter, ATP-binding protein UrtE {ECO:0000313|EMBL:EIP98388.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
urtE2; urea ABC transporter ATPase protein UrtE
berkeley_reactor_200306_planktonic_scaffold_23420_164
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

209040..210269
DNA (1230bp) protein (410aa)
acetamidase (EC:3.5.1.-)
Putative acetamidase/formamidase n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6ATP8_9BACT
Putative acetamidase/formamidase {ECO:0000313|EMBL:EIP98389.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
berkeley_reactor_200306_planktonic_scaffold_23420_165
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

210273..210623
DNA (351bp) protein (117aa)
Putative regulatory protein, FmdB family n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6ATP9_9BACT
Putative regulatory protein, FmdB family {ECO:0000313|EMBL:EIP98390.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
FmdB family regulatory protein
berkeley_reactor_200306_planktonic_scaffold_23420_166
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

210787..211227
DNA (441bp) protein (147aa)
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_23420_167
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(211384..212358)
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003670070
ribose ABC superfamily ATP binding cassette transporter, binding protein
Ribose ABC superfamily ATP binding cassette transporter, binding protein {ECO:0000313|EMBL:AIE84665.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
berkeley_reactor_200306_planktonic_scaffold_23420_168
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

212544..213077
DNA (534bp) protein (178aa)
Transcriptional regulator n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGN9_9BACT
Transcriptional regulator {ECO:0000313|EMBL:EEF61090.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_23420_169
uncultured Verrucomicrobia bacterium, Verrucomicrobia, Bacteria

Not on your lists

213107..214378
DNA (1272bp) protein (424aa)
Membrane protein n=1 Tax=uncultured Verrucomicrobia bacterium RepID=D2DXX6_9BACT
Membrane protein {ECO:0000313|EMBL:ACO70949.1}; TaxID=156588 species="Bacteria; Verrucomicrobia; environmental samples.;" source="uncultured Verrucomicrobia bacterium.;"
membrane protein
berkeley_reactor_200306_planktonic_scaffold_23420_170
uncultured Verrucomicrobia bacterium, Verrucomicrobia, Bacteria

Not on your lists

214393..214821
DNA (429bp) protein (143aa)
Putative uncharacterized protein n=1 Tax=uncultured Verrucomicrobia bacterium RepID=D2DXX5_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ACO70948.1}; TaxID=156588 species="Bacteria; Verrucomicrobia; environmental samples.;" source="uncultured Verrucomicrobia bacterium.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_171
Rhodopirellula baltica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

214981..215748
DNA (768bp) protein (256aa)
Uncharacterized protein n=2 Tax=Elizabethkingia anophelis RepID=L8JZF1_9FLAO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAD74636.1}; TaxID=243090 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula baltica (strain SH1).;"
berkeley_reactor_200306_planktonic_scaffold_23420_172
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

215714..216580
DNA (867bp) protein (289aa)
YqjF n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174644A
Uncharacterized protein {ECO:0000313|EMBL:EEF61087.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_23420_173
Calothrix sp. PCC 7507, Calothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(216672..216980)
DNA (309bp) protein (103aa)
Addiction module toxin, RelE/StbE family n=1 Tax=Calothrix sp. PCC 7507 RepID=K9PNB1_9CYAN
RelE/StbE family addiction module toxin
Addiction module toxin, RelE/StbE family {ECO:0000313|EMBL:AFY34022.1}; TaxID=99598 species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Calothrix.;" source="Calothrix sp. PCC 7507.;"
berkeley_reactor_200306_planktonic_scaffold_23420_174
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(216965..217216)
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI00034C4453
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
berkeley_reactor_200306_planktonic_scaffold_23420_175
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(217305..218657)
DNA (1353bp) protein (451aa)
L-threonine synthase (EC:4.2.3.1)
Threonine synthase {ECO:0000313|EMBL:ABE51442.1}; EC=4.2.3.1 {ECO:0000313|EMBL:ABE51442.1};; TaxID=259564 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 /; ACE-M).;"
Threonine synthase n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12YN4_METBU
berkeley_reactor_200306_planktonic_scaffold_23420_176
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(218761..220065)
DNA (1305bp) protein (435aa)
Homoserine dehydrogenase {ECO:0000313|EMBL:EEF62699.1}; EC=1.1.1.3 {ECO:0000313|EMBL:EEF62699.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XB14_9BACT
berkeley_reactor_200306_planktonic_scaffold_23420_177
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(220111..221655)
DNA (1545bp) protein (515aa)
Sulfotransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK71_9BACT
Sulfotransferase {ECO:0000313|EMBL:EEF59709.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
sulfotransferase
berkeley_reactor_200306_planktonic_scaffold_23420_178
unknown

Not on your lists

comp(221652..221870)
DNA (219bp) protein (73aa)

This feature has no annotations

Displaying items 151-180 of 345 in total

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