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berkeley_reactor_200306_planktonic_scaffold_23420

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Displaying items 181-210 of 345 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_23420_179
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(221867..222640)
DNA (774bp) protein (258aa)
Putative O-antigen related protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DGF7_9BACT
xylanase
Tax=RBG_16_Planctomycetes_55_9_curated
berkeley_reactor_200306_planktonic_scaffold_23420_180
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(222724..223071)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQR8_OPITP
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_23420_181
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

223269..225146
DNA (1878bp) protein (626aa)
Na+/H+ antiporter n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67KH2_SYMTH
Na+/H+ antiporter
Tax=BJP_08E140C01_Clostridiales_46_19
berkeley_reactor_200306_planktonic_scaffold_23420_182
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(225267..225671)
DNA (405bp) protein (135aa)
Putative fluoride ion transporter CrcB n=1 Tax=Rhodovulum sp. PH10 RepID=J6LJV7_9RHOB
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
camphor resistance protein CrcB
berkeley_reactor_200306_planktonic_scaffold_23420_183
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

226227..227321
DNA (1095bp) protein (365aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
biotin synthase (EC:2.8.1.6)
Biotin synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGH9_9BACT
berkeley_reactor_200306_planktonic_scaffold_23420_184
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

227347..228327
DNA (981bp) protein (327aa)
methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Acaryochloris sp. CCMEE 5410 RepID=UPI00024844B6
6-O-methylguanine DNA methyltransferase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
berkeley_reactor_200306_planktonic_scaffold_23420_185
unknown

Not on your lists

228374..229759
DNA (1386bp) protein (462aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_186
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

229804..230661
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGH8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61029.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_187
unknown

Not on your lists

comp(230668..230877)
DNA (210bp) protein (70aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_188
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

230942..231178
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIF3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60414.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_23420_189
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(231238..231771)
DNA (534bp) protein (178aa)
Hypothetical exported protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LW16_SYNAS
hypothetical protein
Hypothetical exported protein {ECO:0000313|EMBL:ABC78273.1}; TaxID=56780 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
berkeley_reactor_200306_planktonic_scaffold_23420_190
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(231931..232500)
DNA (570bp) protein (190aa)
Hypothetical exported protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LW16_SYNAS
hypothetical protein
Hypothetical exported protein {ECO:0000313|EMBL:ABC78273.1}; TaxID=56780 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
berkeley_reactor_200306_planktonic_scaffold_23420_191
unknown

Not on your lists

232887..232994
DNA (108bp) protein (36aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_192
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

233216..235525
DNA (2310bp) protein (770aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJQ0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59926.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_193
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

235657..236070
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJQ1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59927.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_23420_194
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(236225..237514)
DNA (1290bp) protein (430aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
phosphopyruvate hydratase (EC:4.2.1.11)
Enolase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJE7_9BACT
berkeley_reactor_200306_planktonic_scaffold_23420_195
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

237881..240586
DNA (2706bp) protein (902aa)
Glycoside hydrolase family 2 sugar binding protein n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NWA4_GRAMM
Glycoside hydrolase family 2 sugar binding protein {ECO:0000313|EMBL:AEU36616.1}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8).;"
glycoside hydrolase family protein
berkeley_reactor_200306_planktonic_scaffold_23420_196
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(240705..241547)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XC59_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62527.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_197
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(241607..243250)
DNA (1644bp) protein (548aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
2-isopropylmalate synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D232_9BACT
2-isopropylmalate synthase
berkeley_reactor_200306_planktonic_scaffold_23420_198
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

243528..245129
DNA (1602bp) protein (534aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ76_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60114.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_23420_199
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(245126..246343)
DNA (1218bp) protein (406aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Aspartokinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XB17_9BACT
lysC; Aspartokinase
berkeley_reactor_200306_planktonic_scaffold_23420_200
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(246462..246998)
DNA (537bp) protein (179aa)
ATP/cobalamin adenosyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIH8_9BACT
ATP/cobalamin adenosyltransferase {ECO:0000313|EMBL:EEF60439.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ATP--cobalamin adenosyltransferase
berkeley_reactor_200306_planktonic_scaffold_23420_201
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(247040..248008)
DNA (969bp) protein (323aa)
Cell wall hydrolase/autolysin n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XII1_9BACT
Cell wall hydrolase/autolysin {ECO:0000313|EMBL:EEF60442.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cell wall hydrolase
berkeley_reactor_200306_planktonic_scaffold_23420_202
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

248142..249347
DNA (1206bp) protein (402aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XII3_9BACT
berkeley_reactor_200306_planktonic_scaffold_23420_203
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

249356..249718
DNA (363bp) protein (121aa)
putative lactoylglutathione lyase (EC:4.4.1.5)
Putative Lactoylglutathione lyase {ECO:0000313|EMBL:CBK43171.1}; EC=4.4.1.5 {ECO:0000313|EMBL:CBK43171.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
glyoxalase n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174591B
berkeley_reactor_200306_planktonic_scaffold_23420_204
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

249715..249918
DNA (204bp) protein (68aa)
Tax=RBG_13_Deltaproteobacteria_43_22_curated
berkeley_reactor_200306_planktonic_scaffold_23420_205
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

249995..250381
DNA (387bp) protein (129aa)
Putative uncharacterized protein id=2647738 bin=GWF2_Lentisphaerae_57_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
nucleotidyltransferase
Tax=RBG_13_Deltaproteobacteria_43_22_curated
berkeley_reactor_200306_planktonic_scaffold_23420_206
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

250388..251293
DNA (906bp) protein (302aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XII4_9BACT
succinyl-CoA synthetase subsunit alpha
berkeley_reactor_200306_planktonic_scaffold_23420_207
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

251386..252216
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XII5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60446.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_23420_208
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(252232..253338)
DNA (1107bp) protein (369aa)
Response regulator receiver sensor signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XII6_9BACT
Response regulator receiver sensor signal transduction histidine kinase {ECO:0000313|EMBL:EEF60447.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
histidine kinase
Displaying items 181-210 of 345 in total

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