name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_planktonic_scaffold_23420_209
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(253423..254718)
|
Citrate synthase id=2648435 bin=GWF2_Lentisphaerae_57_35 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
cis2; hypothetical protein
Tax=GWF2_Verrucomicrobia_62_7_curated
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_210
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
255098..256543
|
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNQ1_9BACT
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_211
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
256661..257323
|
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Thymidylate kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNP9_9BACT
tmk; thymidylate kinase
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_212
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
257367..257699
|
Conserved hypothetical cytosolic protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNP8_9BACT
cytoplasmic protein
Tax=RBG_16_Deltaproteobacteria_49_23_curated
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_213
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(257784..258422)
|
Phospholipid/glycerol acyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMY5_9BACT
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:EEF58781.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_214
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(258553..259218)
|
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Cytidylate kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMY6_9BACT
aroA; 5-enolpyruvylshikimate-3-phosphate synthase and cytidylate kinase
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_215
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(259299..260747)
|
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|RuleBase:RU000531, ECO:0000256|SAAS:SAAS00215557}; EC=2.5.1.19 {ECO:0000256|RuleBase:RU000531, ECO:0000256|SAAS:SAAS00215589};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMY7_9BACT
aroA: 3-phosphoshikimate 1-carboxyvinyltransferase
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_216
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(260757..261719)
|
Prephenate dehydrogenase {ECO:0000313|EMBL:EEF58785.1}; EC=1.3.1.12 {ECO:0000313|EMBL:EEF58785.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMY9_9BACT
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_217
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria
|
Not on your lists |
comp(261842..262894)
|
glucose-fructose oxidoreductase n=1 Tax=Schlesneria paludicola RepID=UPI00029B0E48
oxidoreductase domain-containing protein
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_218
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(262945..263802)
|
Cobalamin (Vitamin B12) biosynthesis CbiX protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMZ1_9BACT
Cobalamin (Vitamin B12) biosynthesis CbiX protein {ECO:0000313|EMBL:EEF58787.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_219
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
263918..264334
|
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFW2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61124.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cytochrome C
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_220
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(264415..266241)
|
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA primase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFW4_9BACT
DNA primase
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_221
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(266257..266928)
|
Colicin V production protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFW5_9BACT
Colicin V production protein {ECO:0000313|EMBL:EEF61127.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_222
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(266982..268742)
|
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFW6_9BACT
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:EEF61128.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_223
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
268854..269870
|
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFW7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61129.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_224
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(269911..271326)
|
Carbohydrate kinase, YjeF related protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIV0_9BACT
Carbohydrate kinase, YjeF related protein {ECO:0000313|EMBL:EEF60177.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_225
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(271710..272525)
|
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00037EFBC4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAY53567.1}; TaxID=216595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain SBW25).;"
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_226
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(272554..273123)
|
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00037EFBC4
hemolysin-coregulated protein
Hemolysin-coregulated protein (Uncharacterized) {ECO:0000313|EMBL:AFL74235.1}; TaxID=765911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_227
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
273313..274260
|
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DA99_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_228
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
274383..275063
|
Two component transcriptional regulator, winged helix family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLG9_9BACT
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EEF59372.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
two component transcriptional regulator
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_229
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
275212..276387
|
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.13.3)
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLH0_9BACT
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_230
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria
|
Not on your lists |
276783..277334
|
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUG0_OPITP
ECF subfamily RNA polymerase sigma-24 factor
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_231
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria
|
Not on your lists |
277342..277821
|
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUF9_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB74002.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_232
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria
|
Not on your lists |
277818..279452
|
RDD domain containing protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUF8_OPITP
RDD domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_233
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
279504..279983
|
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIA9_9BACT
ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_234
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
280233..281015
|
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGJ8_9BACT
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_235
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
281012..281422
|
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGK1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61052.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_236
unknown
|
Not on your lists |
281644..281853
|
This feature has no annotations |
|
berkeley_reactor_200306_planktonic_scaffold_23420_237
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(281896..282528)
|
Phospholipase/Carboxylesterase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS38_9BACT
Phospholipase/Carboxylesterase {ECO:0000313|EMBL:EEF57334.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
serine esterase
|
|
berkeley_reactor_200306_planktonic_scaffold_23420_238
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(282537..283733)
|
Response regulator receiver protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS02_9BACT
Response regulator receiver protein {ECO:0000313|EMBL:EEF57373.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
sensor protein
|