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berkeley_reactor_200306_planktonic_scaffold_23420

Search features with annotation key words

Displaying items 211-240 of 345 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_23420_209
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(253423..254718)
DNA (1296bp) protein (432aa)
Citrate synthase id=2648435 bin=GWF2_Lentisphaerae_57_35 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
cis2; hypothetical protein
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_23420_210
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

255098..256543
DNA (1446bp) protein (482aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNQ1_9BACT
berkeley_reactor_200306_planktonic_scaffold_23420_211
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

256661..257323
DNA (663bp) protein (221aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Thymidylate kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNP9_9BACT
tmk; thymidylate kinase
berkeley_reactor_200306_planktonic_scaffold_23420_212
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

257367..257699
DNA (333bp) protein (111aa)
Conserved hypothetical cytosolic protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNP8_9BACT
cytoplasmic protein
Tax=RBG_16_Deltaproteobacteria_49_23_curated
berkeley_reactor_200306_planktonic_scaffold_23420_213
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(257784..258422)
DNA (639bp) protein (213aa)
Phospholipid/glycerol acyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMY5_9BACT
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:EEF58781.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase
berkeley_reactor_200306_planktonic_scaffold_23420_214
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(258553..259218)
DNA (666bp) protein (222aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Cytidylate kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMY6_9BACT
aroA; 5-enolpyruvylshikimate-3-phosphate synthase and cytidylate kinase
berkeley_reactor_200306_planktonic_scaffold_23420_215
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(259299..260747)
DNA (1449bp) protein (483aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|RuleBase:RU000531, ECO:0000256|SAAS:SAAS00215557}; EC=2.5.1.19 {ECO:0000256|RuleBase:RU000531, ECO:0000256|SAAS:SAAS00215589};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMY7_9BACT
aroA: 3-phosphoshikimate 1-carboxyvinyltransferase
berkeley_reactor_200306_planktonic_scaffold_23420_216
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(260757..261719)
DNA (963bp) protein (321aa)
Prephenate dehydrogenase {ECO:0000313|EMBL:EEF58785.1}; EC=1.3.1.12 {ECO:0000313|EMBL:EEF58785.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMY9_9BACT
berkeley_reactor_200306_planktonic_scaffold_23420_217
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(261842..262894)
DNA (1053bp) protein (351aa)
glucose-fructose oxidoreductase n=1 Tax=Schlesneria paludicola RepID=UPI00029B0E48
oxidoreductase domain-containing protein
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_23420_218
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(262945..263802)
DNA (858bp) protein (286aa)
Cobalamin (Vitamin B12) biosynthesis CbiX protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMZ1_9BACT
Cobalamin (Vitamin B12) biosynthesis CbiX protein {ECO:0000313|EMBL:EEF58787.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_219
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

263918..264334
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFW2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61124.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cytochrome C
berkeley_reactor_200306_planktonic_scaffold_23420_220
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(264415..266241)
DNA (1827bp) protein (609aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA primase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFW4_9BACT
DNA primase
berkeley_reactor_200306_planktonic_scaffold_23420_221
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(266257..266928)
DNA (672bp) protein (224aa)
Colicin V production protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFW5_9BACT
Colicin V production protein {ECO:0000313|EMBL:EEF61127.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_23420_222
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(266982..268742)
DNA (1761bp) protein (587aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFW6_9BACT
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:EEF61128.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_223
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

268854..269870
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFW7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61129.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_224
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(269911..271326)
DNA (1416bp) protein (472aa)
Carbohydrate kinase, YjeF related protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIV0_9BACT
Carbohydrate kinase, YjeF related protein {ECO:0000313|EMBL:EEF60177.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_225
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(271710..272525)
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00037EFBC4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAY53567.1}; TaxID=216595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain SBW25).;"
berkeley_reactor_200306_planktonic_scaffold_23420_226
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(272554..273123)
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00037EFBC4
hemolysin-coregulated protein
Hemolysin-coregulated protein (Uncharacterized) {ECO:0000313|EMBL:AFL74235.1}; TaxID=765911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
berkeley_reactor_200306_planktonic_scaffold_23420_227
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

273313..274260
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DA99_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_23420_228
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

274383..275063
DNA (681bp) protein (227aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLG9_9BACT
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EEF59372.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
two component transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_23420_229
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

275212..276387
DNA (1176bp) protein (392aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.13.3)
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLH0_9BACT
berkeley_reactor_200306_planktonic_scaffold_23420_230
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

276783..277334
DNA (552bp) protein (184aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUG0_OPITP
ECF subfamily RNA polymerase sigma-24 factor
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_23420_231
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

277342..277821
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUF9_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB74002.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_23420_232
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

277818..279452
DNA (1635bp) protein (545aa)
RDD domain containing protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUF8_OPITP
RDD domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_23420_233
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

279504..279983
DNA (480bp) protein (160aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIA9_9BACT
ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
berkeley_reactor_200306_planktonic_scaffold_23420_234
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

280233..281015
DNA (783bp) protein (261aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGJ8_9BACT
berkeley_reactor_200306_planktonic_scaffold_23420_235
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

281012..281422
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGK1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61052.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_23420_236
unknown

Not on your lists

281644..281853
DNA (210bp) protein (70aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_237
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(281896..282528)
DNA (633bp) protein (211aa)
Phospholipase/Carboxylesterase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS38_9BACT
Phospholipase/Carboxylesterase {ECO:0000313|EMBL:EEF57334.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
serine esterase
berkeley_reactor_200306_planktonic_scaffold_23420_238
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(282537..283733)
DNA (1197bp) protein (399aa)
Response regulator receiver protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS02_9BACT
Response regulator receiver protein {ECO:0000313|EMBL:EEF57373.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
sensor protein
Displaying items 211-240 of 345 in total

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