ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_23420_228

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 274383..275063

Top 3 Functional Annotations

Value Algorithm Source
Two component transcriptional regulator, winged helix family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLG9_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 69.6
  • Coverage: 224.0
  • Bit_score: 323
  • Evalue 1.50e-85
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EEF59372.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 69.6
  • Coverage: 224.0
  • Bit_score: 323
  • Evalue 2.10e-85
two component transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 64.0
  • Coverage: 225.0
  • Bit_score: 295
  • Evalue 7.20e-78

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 681
GTGAAACCGCGAATTTTAGTTGTTGATGACGAACCCGAAGCGGTGGAACTCGTGGAGTTCAACCTCAAGCAGGCCGGCTACGCCGTCACCACGGCGGCGGACGGCGCCGAAGCTTTGAAGAAGGCCCGCACCCAGACTCCCGACCTCATCGTTCTGGATGTGATGCTGCCGGAGATGGATGGTTTCGAGATTTGCAAGACGCTGCGGCTGGACGCCGCGACCGCCAAGGTGCCGATCATCATGCTCACCGCCAAGGCGGCGGAGATTGACCGCGTGCTCGGCCTGGAGCTGGGCGCGGATGATTACCTGACCAAGCCGTTCAGCCCGCGCGAATTGCTGTTGCGCGTGAAGAAAATTCTCGCCCGGGCGCAGACCGAGGAAAAACCGCGCGAACAACTGCGCTTTGGCGACCTGCTGATTGACCTGCCGCGGCACGTGGCGAGCTGGAAAAACAAGCCCATCGAACTGACCGCCACGGAATTCAAATTGCTCACCGTGCTGGCCCAGCGCGCGGGCCGGGTGCAATCCCGCGATCATCTGCTCCGCGACGTCTGGGAATACGACAGCATGATTGACACGCGCACGGTGGACACGCACATGCGCCGGCTGCGCGAAAAAATCGGTCCCGCCTCGAAGCATCTGGACACGGTGCGCGGCGTCGGGTATCGGTTTGTCGAATAA
PROTEIN sequence
Length: 227
VKPRILVVDDEPEAVELVEFNLKQAGYAVTTAADGAEALKKARTQTPDLIVLDVMLPEMDGFEICKTLRLDAATAKVPIIMLTAKAAEIDRVLGLELGADDYLTKPFSPRELLLRVKKILARAQTEEKPREQLRFGDLLIDLPRHVASWKNKPIELTATEFKLLTVLAQRAGRVQSRDHLLRDVWEYDSMIDTRTVDTHMRRLREKIGPASKHLDTVRGVGYRFVE*