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berkeley_reactor_200306_planktonic_scaffold_23420_230

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 276783..277334

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUG0_OPITP similarity UNIREF
DB: UNIREF100
  • Identity: 56.8
  • Coverage: 169.0
  • Bit_score: 189
  • Evalue 2.10e-45
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 56.8
  • Coverage: 169.0
  • Bit_score: 189
  • Evalue 5.80e-46
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 59.0
  • Coverage: 173.0
  • Bit_score: 204
  • Evalue 1.10e-49

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Taxonomy

RLO_Verrucomicrobia_64_8 → Opitutae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 552
ATGACCAATGCGCAGCAGTTCGAGACGTTCCTGCATGACTACCAGAACATGGTGTTCAGCACTGCCATGCGCCTGCTTGCCAAATCCGCCGAAGCCGAAGACGTCACCCAGGAGGTTTTCCTGAAGGCGTATGAACATTTCGACCAGTTGCGGGACAACCCGGCGGCGGGCGGCTGGCTGAAAACCGTGGCCACCAATCTGTGCCTGAATCATCTTGCCCGGTATCGCTCGCGCTGGAGTTTTTTTTCCGACCTGTCCGGCGGCGACAACGAAGACGTTCAGGAACCGCAATTTGCCGCGGCGGACGATGTGGCGGAGCGGCTCAACAGCGCGGAACGTTGCGCGTTGGTCGAGCAGGCGTTGCGGGAACTGCCCGCCGCGCAGCGCGTGCCGCTGGTGCTCTATCACCTGGAGGATTTCGGCTATGAGGAAATCGCGGCCAAACTCGGCGTGTCGCTCGGCAAAGTGAAGACGGACATTTTTCGCGGCCGCGAACATTTGCGGCGGAAACTGCGCCTGAAATTTGATTTGCAGGAAGACCTCGCGCTTTAA
PROTEIN sequence
Length: 184
MTNAQQFETFLHDYQNMVFSTAMRLLAKSAEAEDVTQEVFLKAYEHFDQLRDNPAAGGWLKTVATNLCLNHLARYRSRWSFFSDLSGGDNEDVQEPQFAAADDVAERLNSAERCALVEQALRELPAAQRVPLVLYHLEDFGYEEIAAKLGVSLGKVKTDIFRGREHLRRKLRLKFDLQEDLAL*