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berkeley_reactor_200306_planktonic_scaffold_23420_233

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 279504..279983

Top 3 Functional Annotations

Value Algorithm Source
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 77.2
  • Coverage: 158.0
  • Bit_score: 255
  • Evalue 3.70e-65
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIA9_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 77.2
  • Coverage: 158.0
  • Bit_score: 255
  • Evalue 2.70e-65
ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase similarity KEGG
DB: KEGG
  • Identity: 57.4
  • Coverage: 155.0
  • Bit_score: 191
  • Evalue 1.00e-46

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 480
ATGGTTCACGTTGGCATTGGCTATGACGTTCATCAACTGGTCGCCGGGCGCAAGCTCGTCCTCGGCGGCGTGGAAATTCCGCACACGAAAGGGCTCGACGGCCATTCGGACGCCGATGCGTTGATGCACGCCATCTGCGACGCCGTGCTGGGCGCGATTGGCGAGGAGGACATCGGGCACTTTTTTCCGAACACTGATCCGCGTTGGAAAAATGTTCCGAGCAAAATTTTTCTGGAGGAGGCCGCCAAACAAGTGGCCAAACTCAACGGCAAAATCGTGAACGTGGACGCCACGTTGATTGCCCAGGCACCGAAAATTTATCCGCACATCGCCGGGATGAAACAACGCATCGCCGCCGCGCTCGGTATTTCCGAAAAGAAAGTCGGCGTAAAAGCCACCACCAACGAGTGGATGGGATTCGTCGGCCGCGAAGAAGGCATGGCTGCGATGGCCGTGGCGAGCGTGGATTTGCCGGGATAA
PROTEIN sequence
Length: 160
MVHVGIGYDVHQLVAGRKLVLGGVEIPHTKGLDGHSDADALMHAICDAVLGAIGEEDIGHFFPNTDPRWKNVPSKIFLEEAAKQVAKLNGKIVNVDATLIAQAPKIYPHIAGMKQRIAAALGISEKKVGVKATTNEWMGFVGREEGMAAMAVASVDLPG*