ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

berkeley_reactor_200306_planktonic_scaffold_23420_226

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(272554..273123)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00037EFBC4 similarity UNIREF
DB: UNIREF100
  • Identity: 69.1
  • Coverage: 162.0
  • Bit_score: 213
  • Evalue 1.80e-52
hemolysin-coregulated protein similarity KEGG
DB: KEGG
  • Identity: 60.1
  • Coverage: 163.0
  • Bit_score: 201
  • Evalue 2.00e-49
Hemolysin-coregulated protein (Uncharacterized) {ECO:0000313|EMBL:AFL74235.1}; TaxID=765911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.1
  • Coverage: 163.0
  • Bit_score: 201
  • Evalue 9.90e-49

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Thiocystis violascens → Thiocystis → Chromatiales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 570
ATGAAACATATATTCAGAAAGTTGTGCGGCGCGGCCTGTCTTGCTGCCGTTATGATCGTGCTTCCTGCTCAGGCGGCGGTGGACATGTTTCTGGACCTTGGTTCTGGCATCCCGGGAGAATCCACGGATAGTGTCCACAAGGGCCAAGTTGATGTGCTGGCCTGGAGTTGGGGGATGTCAAATTCCGGCTCCGCGCAAGTCGGCGGCGGTGCCGGCGCAGGAAAGGTCAGCGTCCAAGATCTTAGCGTGACCAAGTATGTGGACAAGTCGAGCCCACTGCTTATGTTGCACTGTGCCAACGGAGCCCACATTGCCAAAGCCACTTTATATGTGCGCAAGTCGGGGGCGACTCCGGGGGCGACTCCCGTTGAATACATCAAGGTCATCATGACGGATGTTTTGGTGACCAGTGTTTCAACCGGCGGCTCCGGCGGCGAGGATCGGTTGACCGAGAATATCAGCCTCAATTTTGCAAAGGTGGAGTTTGATTATGTGCCAGTGGACCCAAAGGGCACACCCGGCACGGCAATTCCATTCAAGTGGGATATCGCAGGTAATGCTGCCTTGTAA
PROTEIN sequence
Length: 190
MKHIFRKLCGAACLAAVMIVLPAQAAVDMFLDLGSGIPGESTDSVHKGQVDVLAWSWGMSNSGSAQVGGGAGAGKVSVQDLSVTKYVDKSSPLLMLHCANGAHIAKATLYVRKSGATPGATPVEYIKVIMTDVLVTSVSTGGSGGEDRLTENISLNFAKVEFDYVPVDPKGTPGTAIPFKWDIAGNAAL*