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berkeley_reactor_200306_planktonic_scaffold_23420_112

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 117632..120004

Top 3 Functional Annotations

Value Algorithm Source
Type II and III secretion system protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF01_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 47.3
  • Coverage: 296.0
  • Bit_score: 248
  • Evalue 1.60e-62
Type II and III secretion system protein {ECO:0000313|EMBL:EEF61499.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 47.3
  • Coverage: 296.0
  • Bit_score: 248
  • Evalue 2.30e-62
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 41.2
  • Coverage: 148.0
  • Bit_score: 87
  • Evalue 1.00e-14

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 2373
ATGACTAAAGCCGCCATTTTATTCCTTGGCCTGACCGCTCTCGTCGCTCAGCCCTTCGACGCGCCTGCACAGGACAACCCCACCGCCATTGCGGTCAACGAAGCCGTGCTCCGTCAGGCCAATACGATTGTGCTGCGCCAAAAACTCACCGAGGCCGCCGCCGCCAAGCAGCGTGGAGACATTGTCCAGGCCGCCAAGCTTTATCAGGAATCATGCGATTTGGTGAAACAGATTGGCTCCGGGATTGACGCCGAAGCCGCCGAGGCGGTGAACGGCCTGACGAGCACGCGCCTGACGCTGGCGCGCGAGTGCCAGAACCGCGGCGATTATCGCGGCGCGCAAACCCAGGTGCAGCAGGTTTTGACTGTGGCTCCCAAAAATCAGGAGGCCCTCGATTTCAAGAAACAAAACGATCAACTGCTGGCCTCCATGAAGGGCAGGATGCCCAGTGAAGAAACACTGGAAAAAGTTCCCCAGATCAGCGCCCAGAAAACGGATGCGGCCACCATGGTGCAGGACGGAAAATTGCTGTATGAAATGGGCAAACTGGATGATGCGGAGGTGAAGCTGAAACAGGCGCTCACCCTGAATCCGGATAATCAGGCGGCATACTATTACATGAACCTGATTCAACAGGCCAAGTTCGCCCGTGAATCCTCCCAGCACACGGTGGATACCCAGCAGCGCATGACCGAGGTGGAAAAACGCTGGGTGTTGCCCACGGCCAACAAGGCCCTGCCGGTGCCGAATCCCTATGCCACCAACACGCTGGTGTTCACCGGCCCCGGTCGTCAGGCCATTCTTGCCAAGCTGGACAAGATTCGTCTCGATAATGTCTCGTATGACGGATTGCCGTTAAGTGAAGTGCTCCGCAATCTTTCCGAGCAGGCCAAACTGCGCGACCCCGAACGCAAGGGCATTAACTTTCTGATCAACCCGAATCCCGACAAATCGGGACAACCCATTGCGCCGACTGGAACCGGTGGTCTGGGCGGGGGGGCTTACGGCGGCGGGGCGTATCCTGCCGGTGGAGCGGCGGGCGCTTATGGTGCGGCGGGTGCTTATGGCGCGCAGCCGGGCGGAGCACCGGCGATTGATCCCGCAACCGGTCTGCCGATCACCACGCCGGCCGGCGGTTCGGAGAGCAGCAGTGAAACTGAAGATGTGGGCTCGTTCATCGTCAAGATTCCCAATTTGACCGACGTGCGCTTGGCGGATGTGCTGGACGCGATCGTGATGGTGTGCGATCACCCCATCAAGTATTCAGTCCAGGATTTTGCGGTGGTCTTCTCCGCCAAAGGACCGGAGACACCGCAACTGTTCAGCCGGACATTTAAAGTGGATCCGAATACGTTCTATTCCGGTCTCGAAAGTGTCAGCGCCCAAAGCTTCGGCTCCACTTACAGTTCAGGCAGCGGCTCCGGTGGGTCCTCCGGCGGTGGCGGTGGCGGCGGTGGCGGCGGCAACGGCCAGAATAACAACAGCGGAGCGGTGGTCGGCGTGGTGAATGCCTTCGCCGGCGCGGGCAGCCTGCGCAATACCGGCAACGGTCAGGGGGGCGGTGGCGGCGGCACCCAGGGGCAGGGAACGACCAGTTTGCTTGAAGGTGGCGTGGGCGGTCAGGGCGGTGTTGGCGGCCGGGGCGGCGGTGGTGGCGGCAATCAGAATGACCAAGGTGGGTTGAGTTTTATCACCCGCCAGACATCGGCCGCCACTCCCAGCGAGTTGGTGCGGGCATTCTTTACCTCCTTGGGAGTGAACCTGCAGGATCCTCCCGGCAAGGCGGTTTTTTTCAATGACCGGCTCGGCAAGTTATTCGTGAAAGCCACGCAGGACGATCTGGATACGATTGAACGTGCGATTGAGGCGTTGAATGAAGTGGCGCCGCAGGTTCACATCAAGGCGCGTTTCATCGAGGTGGCACAGGATGACAGTAAGGCGCTGGGCTTTGACTGGTATTTGGGGCAATTCAACGTCAATGGCAGCGGATCGGTGGTGGCTTCGGGCGGATCTTCCCCGTCGCTAACTGTCCCGACTTCTGCGGCCAATCCGCTGGGCGCATTTCCCGGCAGCACTGCTGCCAGTGTGATTCCCGGTTCGGCCAATGATCAATGGATCACCAGCGGTCTGCGCAATTCCGCGCCGGCGCTGGGAACGGTTACGGGTATTTTGACCGACCCCAATTTCCGCATGGTCATTCACGCCTTGGAGCAGCGCAGCGGCACTGAAGCGCTGGCCGAACCTGAAGTGACCACGACGAGCGGTCGTCAAACCCAGATGCGCGCGACCCAGGTGCAAAGTATCATCACCGGTTTCAATTTCCAGCAGGGCGCGGGAGCGACCAGCACCAGCGGCACGACCACCGGACAATAA
PROTEIN sequence
Length: 791
MTKAAILFLGLTALVAQPFDAPAQDNPTAIAVNEAVLRQANTIVLRQKLTEAAAAKQRGDIVQAAKLYQESCDLVKQIGSGIDAEAAEAVNGLTSTRLTLARECQNRGDYRGAQTQVQQVLTVAPKNQEALDFKKQNDQLLASMKGRMPSEETLEKVPQISAQKTDAATMVQDGKLLYEMGKLDDAEVKLKQALTLNPDNQAAYYYMNLIQQAKFARESSQHTVDTQQRMTEVEKRWVLPTANKALPVPNPYATNTLVFTGPGRQAILAKLDKIRLDNVSYDGLPLSEVLRNLSEQAKLRDPERKGINFLINPNPDKSGQPIAPTGTGGLGGGAYGGGAYPAGGAAGAYGAAGAYGAQPGGAPAIDPATGLPITTPAGGSESSSETEDVGSFIVKIPNLTDVRLADVLDAIVMVCDHPIKYSVQDFAVVFSAKGPETPQLFSRTFKVDPNTFYSGLESVSAQSFGSTYSSGSGSGGSSGGGGGGGGGGNGQNNNSGAVVGVVNAFAGAGSLRNTGNGQGGGGGGTQGQGTTSLLEGGVGGQGGVGGRGGGGGGNQNDQGGLSFITRQTSAATPSELVRAFFTSLGVNLQDPPGKAVFFNDRLGKLFVKATQDDLDTIERAIEALNEVAPQVHIKARFIEVAQDDSKALGFDWYLGQFNVNGSGSVVASGGSSPSLTVPTSAANPLGAFPGSTAASVIPGSANDQWITSGLRNSAPALGTVTGILTDPNFRMVIHALEQRSGTEALAEPEVTTTSGRQTQMRATQVQSIITGFNFQQGAGATSTSGTTTGQ*