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berkeley_reactor_200306_planktonic_scaffold_23420

Search features with annotation key words

Displaying items 31-60 of 345 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_23420_31
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(34234..35346)
DNA (1113bp) protein (371aa)
DGQHR domain-containing protein n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FUV4_ECHVK
DGQHR domain-containing protein
DGQHR domain-containing protein {ECO:0000313|EMBL:AGA77679.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
berkeley_reactor_200306_planktonic_scaffold_23420_32
unknown

Not on your lists

comp(35343..35846)
DNA (504bp) protein (168aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_33
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(37356..38918)
DNA (1563bp) protein (521aa)
Phosphoesterase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q027T7_SOLUE
phosphoesterase
Phosphoesterase {ECO:0000313|EMBL:ABJ82720.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
berkeley_reactor_200306_planktonic_scaffold_23420_34
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

39196..40386
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPK5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58233.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
signal peptide
berkeley_reactor_200306_planktonic_scaffold_23420_35
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(40356..40811)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6B013_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EIQ00605.1}; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
cupin
berkeley_reactor_200306_planktonic_scaffold_23420_36
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

41301..42170
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSR6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57118.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_37
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(42303..42746)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCW2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62308.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_38
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(42787..44076)
DNA (1290bp) protein (430aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glutamate-1-semialdehyde aminotransferase (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XD98_9BACT
berkeley_reactor_200306_planktonic_scaffold_23420_39
unknown

Not on your lists

comp(44124..44531)
DNA (408bp) protein (136aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_40
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(44630..45616)
DNA (987bp) protein (329aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPW4_9BACT
berkeley_reactor_200306_planktonic_scaffold_23420_41
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(45619..46410)
DNA (792bp) protein (264aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Prolipoprotein diacylglyceryl transferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPW5_9BACT
prolipoprotein diacylglyceryl transferase
berkeley_reactor_200306_planktonic_scaffold_23420_42
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(46514..47425)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPW6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58147.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_23420_43
unknown

Not on your lists

comp(47422..47883)
DNA (462bp) protein (154aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_44
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

48130..49269
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-N20 RepID=UPI000372DD9D
uroporphyrinogen decarboxylase
Tax=CG_Deferri_01
berkeley_reactor_200306_planktonic_scaffold_23420_45
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

49466..50842
DNA (1377bp) protein (459aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-N20 RepID=UPI00036FC112
oxygen-independent coproporphyrinogen III oxidase
Tax=CG_Deferri_01
berkeley_reactor_200306_planktonic_scaffold_23420_46
Paenibacillus riograndensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

50929..53511
DNA (2583bp) protein (861aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CQR57879.1}; TaxID=1073571 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus riograndensis SBR5.;"
berkeley_reactor_200306_planktonic_scaffold_23420_47
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

53562..54953
DNA (1392bp) protein (464aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-N20 RepID=UPI00037AFF77
protoporphyrinogen oxidase
Tax=CG_Deferri_01
berkeley_reactor_200306_planktonic_scaffold_23420_48
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

55030..56046
DNA (1017bp) protein (339aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Ferrochelatase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAP5_9BACT
ferrochelatase
berkeley_reactor_200306_planktonic_scaffold_23420_49
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(56127..56726)
DNA (600bp) protein (200aa)
FHA domain containing protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XC98_9BACT
FHA domain containing protein {ECO:0000313|EMBL:EEF62566.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
multidrug ABC transporter ATPase
berkeley_reactor_200306_planktonic_scaffold_23420_50
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(56787..57149)
DNA (363bp) protein (121aa)
Ferredoxin, 2Fe-2S n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL37_9BACT
Ferredoxin, 2Fe-2S {ECO:0000313|EMBL:EEF59388.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
(2Fe-2S) ferredoxin
berkeley_reactor_200306_planktonic_scaffold_23420_51
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(57294..58211)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL41_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59392.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_52
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(58211..58561)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLH2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59375.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_23420_53
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

58669..59637
DNA (969bp) protein (323aa)
Chromosome segregation and condensation protein ScpA n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRG7_9BACT
Segregation and condensation protein A {ECO:0000256|SAAS:SAAS00093938}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
chromosome segregation and condensation protein ScpA
berkeley_reactor_200306_planktonic_scaffold_23420_54
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

59646..60386
DNA (741bp) protein (247aa)
Chromosome segregation and condensation protein, ScpB n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRG8_9BACT
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
scpB; segregation and condensation protein B
berkeley_reactor_200306_planktonic_scaffold_23420_55
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(60481..60918)
DNA (438bp) protein (146aa)
Thioredoxin domain-containing protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1J1H9_9BACT
thioredoxin
Thioredoxin {ECO:0000313|EMBL:AHF90114.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_23420_56
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(60941..62317)
DNA (1377bp) protein (459aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
pyrC; dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKV9_9BACT
berkeley_reactor_200306_planktonic_scaffold_23420_57
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(62372..63124)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPR2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58185.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
prepilin-type N-terminal cleavage/methylation domain
berkeley_reactor_200306_planktonic_scaffold_23420_trna_1
unknown

Not on your lists

63331..63401
DNA (71bp)
transferRNA Gly
berkeley_reactor_200306_planktonic_scaffold_23420_58
unknown

Not on your lists

comp(63437..63706)
DNA (270bp) protein (90aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_59
unknown

Not on your lists

comp(63774..64850)
DNA (1077bp) protein (359aa)

This feature has no annotations

Displaying items 31-60 of 345 in total

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