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berkeley_reactor_200306_planktonic_scaffold_23420_68

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 73378..76995

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.6
  • Coverage: 971.0
  • Bit_score: 1239
  • Evalue 0.0
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00036E5DD9 similarity UNIREF
DB: UNIREF100
  • Identity: 56.8
  • Coverage: 1196.0
  • Bit_score: 1286
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 48.5
  • Coverage: 969.0
  • Bit_score: 822
  • Evalue 1.20e-235

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 3618
ATGGAATCCGGCGGCGCGTTGACGTTTTCCGGCATGGCCGCGCCCGCCCGGCCGTTTTTCGCCGGGCTGTTGCGCAAGCTGTTTCCGGCCCGGCCCATCGTGGTTGTCACGGAAAACCTGAAAGCCCAGGAAAGTTTTCAGCAGGATCTCGAAACCTGGCTGAACGAATTGCGGAACGCGGACGGCAAAATGTCCCCATCAAAAGGCGGTGCGCCAGACGATGTGGCGCCGCGACCCGCCCGCCTCCATGCTCCATCCCCGCCGCTGTTCTACCCCGCCTGGGAAACGTTCCCGCACGAGGGCAAGCTGCCGCATGCCGATGTCATCAGCGACCGGCTGCAAACGCTCGTTGCGCTTTCAGACAAACCGGCCGTCGGCCGGCCGCCGGCGGCCATCGTCGTGGCCAGCGTCACCGCGCTGTTGCAGAAAACCTTTCCGGCGGGCGAAATTCAGGCGCGCACCCGTTCGCTCGAACGCGGCGACCAGACGGCGCCGCTCGACCTGATTGAATTTCTCGAAGAACAGGGCTACGAACCGGAAGCGCAGGTGACGCAAAAAGGCGAACTCGCCTTGCGGGGCGGCATTGTGGACATTTTCCCGCCGACCAGCCCGTGGCCGGTGCGATTGGAGTTTTTCGGCGACGAACTGGAATCGCTGCGGTATTTCGATCCGCTCACGCAGATTTCCCGCGAGGAAATTTCCCGCGTCACAATCCCGCCGGCGGGTGAGCTGGGGATTTTGAAACGACAACTGGAGCGCGGGCTGCCGTCCGCTTCAGCCGCGGGCGAGCCGCGGGCTGCGGACGTTGCCACCAGCATCGGGGCTTCCCCGTCGAAGCGGACGGAAGATCGCGCTCCGTTCGCGACGTTGCTCGACTATCTGCCGAAAACAACCCTTTTCGTTTTGTGCGATCCGGACGCGCTCGCCGTCCACGCCGACAGTTACGCACAGCAGGTTCCCGCCACCGATCCGTTGCTCATTTCCTGGCCGGATTTTCTGGAGGAATTGAACCGGCGCGGATTTACCTCTGTGGCACTGGACGAGGCGGAACATTCTTTCGCCACCCGCCCCGCCGGCCTGGGCTTCGCGACACTCGATGCTTTCCGCCCGCTGGCCGAACGCGCGCCGGAACCGCAGGTTGCCGAGGCGCAACGCCGCGAATTTTTTCAACAGCTTCATCGCTGGCTGCGGCAGGATTATTTCGTCCATGTTTTCTGTAACAACGACGGCGAACGCCAGCGCTTTGAAGAAATTTGGGGCGAACTGGTGGGGCAGGCGGCGCGCCTGTCCCGCTCTCAAGAAAAATTCCCGGAAAAACCCGGGAATAAAATTGGAGACCGGCACGACGCCTGTCCTGCCTTGCACCTCGGCTCGCTGACGCGCGGCTTTATTTGCGATGAAGCGAAACTCGTGGTTGTCACCGACGCGGAAATTTTTGGCCGCTACAAGGTTCAGCGTCCGCGCCGGCTCAAGTCGCCGCACGCATTGGCCGCCCGGTCCGCGCTCGACATTGATTTCACCGATCTGGAGGAGGGCGATCTGGTCGTGCATCTCCAGCACGGCATTGGACGTTACCTGGGATTGAAAAATCTGCCGGGCTCCGCGGATAAATCGGAAATCGGAAATCGGAAATCGGAAATCGAATGCCTGGTCATCGAATACGCGCCCGGCGATCCGGCCAATGAACCGCCGAAATTGTATGTGCCCGTCAGCGAGGCGCATCTCGTCAGCAAATATGTCGGCGCCGGCAAGGCGCATCCGCCGCTGAACACGCTCGGCGGCACGCGCTGGCACAAGGCCAAGGAACAGGCCGAAAAATCCGTGCGCGACGTGGCCGCCGAGCTGTTGCGCATCCAGGCCGTCCGCGAATCCCAGCCCGGTCATCCGTGCAAGCCAGATACGCAATGGCAGCGCGAATTTGAAAGCGCCTTCATCTACGAGGAAACGCCGGATCAACTTTCCGCCATCGCCGAAACCAAGGCGGATCAGGAACGGCCCAAGCCGATGGACCGCTTGATCTGCGGCGACGTCGGTTTTGGCAAGACCGAGGTGGCCATCCGCGCCGCGTTCAAAACCGTGATGGACGGAAGGCAGGCGGCCATCCTGGTGCCGACCACCGTGCTGGCGCAGCAGCATTTTAACAATTTCCGCGAACGCATGGCGGATTATCCCATCCGCGTGGAACTGCTCTCCCGTTTCCGCACCAGGCGCGACCAAAATCGCGTCATCCAGGATCTGGCGTCCGGCGCGGTGGATATTTTGATCGGCACGCATCGCATTGTGCAGGATGACATCGCCTTCAAGGATTTGGGACTGGTGGTGATTGACGAGGAGCAGCGCTTCGGCGTGTTGCACAAGGAAAAATTCAAGCGTCTGCGCACGATGGTGGATGTGCTGACGCTGAGCGCCACGCCGATTCCGCGCACGCTGTATCTCGCGCTGACCGGCGCGCGCGACATGAGCACAATTCAGACGCCGCCGCATGACCGGCTGCCGGTGGAGACGATTGCCACGCCTTATGATGAACGCACCATTCGCGACGCCATCCACCGCGAGCTGAATCGTGGCGGACAGGTTTTCTTCCTGCACAATCGCGTGACAACGATTGACACGATGCTGGCAAAATTGAAATCGCTGGTGCCGCAAGCGCGGATTGTCGTCGGCCACGGCCAGATGCACGCGGACGATCTGGAAGAGGTGATGACGAAATTCGTGAATGGCGAGGCGGATGTGCTGCTGTCCACGACGATCATTGAAAGCGGCCTGGATATTCCCAATGCCAACACCATCATCATTGACCGCGCCGACCGGTTTGGCCTGAGCGAATTGTATCAGTTGCGCGGGCGGGTCGGCCGTTACAAGCACCAGGCTTACGCGTATTTGCTGCTGCCGCGCCACGCGCGACTGTTGACGGACGTGCGCAAGCGCATCAGCGCCATGAAACAATATTCCACGCTCGGGAGCGGATTTAAAATCGCCATGCGCGATTTGGAAATTCGCGGCGCGGGCAATCTGCTGGGCGCGGAACAAAGCGGCCACATCACGGCGGTCGGCTTTGATCTTTACTGTCAGTTGCTGAAACAAAGCGTCGCCGGCTTGAAGGGGGAAAAGGTGAAGCCGCGCGTCGAGGTGCGCGTGGCGCTGGATTTCCTGGAGATGAATGCGGCGGATGAAAGCAGTCGGCGGGGCGAGCGTTCCCGCGAGCCGGACCTCGCAGGTTCAAGCGGCTCGCGAGGACGCTCGCCCCACCAGGCTTCGGAAGGCAGGGCCGGCAATTCAGGCTTGCCCCACACTTATATTGCCGAACCGCACCATCGCATCGAGATTTACCGCAAACTGGCGCAGGCCACGGACAAGCCGGCGCTCGAAGCGTTGCAAAAGGAGTTGCGCGATCGTTTCGGCCCGCTGCCGCCGGCGGTGGAATTGCTGCTGGCGGTGGGCGAATTGAAAATTCTCGCCAGCGAAAAAAACGTGACGAGCATCGAGGTTGACAGCGATAAATTAAAGTTGATCCGCGCCGGCGATTTCATCCAGCTGGGCGGCAAATTTCCGAGGCTCACGAAGAAGGAACCCAGGGCGCGGCTGAAAGAAATCAAACGGCTGTTGCTGGCGCTTTGA
PROTEIN sequence
Length: 1206
MESGGALTFSGMAAPARPFFAGLLRKLFPARPIVVVTENLKAQESFQQDLETWLNELRNADGKMSPSKGGAPDDVAPRPARLHAPSPPLFYPAWETFPHEGKLPHADVISDRLQTLVALSDKPAVGRPPAAIVVASVTALLQKTFPAGEIQARTRSLERGDQTAPLDLIEFLEEQGYEPEAQVTQKGELALRGGIVDIFPPTSPWPVRLEFFGDELESLRYFDPLTQISREEISRVTIPPAGELGILKRQLERGLPSASAAGEPRAADVATSIGASPSKRTEDRAPFATLLDYLPKTTLFVLCDPDALAVHADSYAQQVPATDPLLISWPDFLEELNRRGFTSVALDEAEHSFATRPAGLGFATLDAFRPLAERAPEPQVAEAQRREFFQQLHRWLRQDYFVHVFCNNDGERQRFEEIWGELVGQAARLSRSQEKFPEKPGNKIGDRHDACPALHLGSLTRGFICDEAKLVVVTDAEIFGRYKVQRPRRLKSPHALAARSALDIDFTDLEEGDLVVHLQHGIGRYLGLKNLPGSADKSEIGNRKSEIECLVIEYAPGDPANEPPKLYVPVSEAHLVSKYVGAGKAHPPLNTLGGTRWHKAKEQAEKSVRDVAAELLRIQAVRESQPGHPCKPDTQWQREFESAFIYEETPDQLSAIAETKADQERPKPMDRLICGDVGFGKTEVAIRAAFKTVMDGRQAAILVPTTVLAQQHFNNFRERMADYPIRVELLSRFRTRRDQNRVIQDLASGAVDILIGTHRIVQDDIAFKDLGLVVIDEEQRFGVLHKEKFKRLRTMVDVLTLSATPIPRTLYLALTGARDMSTIQTPPHDRLPVETIATPYDERTIRDAIHRELNRGGQVFFLHNRVTTIDTMLAKLKSLVPQARIVVGHGQMHADDLEEVMTKFVNGEADVLLSTTIIESGLDIPNANTIIIDRADRFGLSELYQLRGRVGRYKHQAYAYLLLPRHARLLTDVRKRISAMKQYSTLGSGFKIAMRDLEIRGAGNLLGAEQSGHITAVGFDLYCQLLKQSVAGLKGEKVKPRVEVRVALDFLEMNAADESSRRGERSREPDLAGSSGSRGRSPHQASEGRAGNSGLPHTYIAEPHHRIEIYRKLAQATDKPALEALQKELRDRFGPLPPAVELLLAVGELKILASEKNVTSIEVDSDKLKLIRAGDFIQLGGKFPRLTKKEPRARLKEIKRLLLAL*