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berkeley_reactor_200306_planktonic_scaffold_269654_38

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(57550..58149)

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 38.1
  • Coverage: 197.0
  • Bit_score: 140
  • Evalue 2.20e-30
2'-5' RNA ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIZ0_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 38.1
  • Coverage: 197.0
  • Bit_score: 140
  • Evalue 1.60e-30
LigT; 2'-5' RNA ligase similarity KEGG
DB: KEGG
  • Identity: 35.4
  • Coverage: 192.0
  • Bit_score: 116
  • Evalue 5.20e-24

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 600
GTGTTGGACGAAAAAGCATCCGCGTTTCAGCGTCTGTTCGTTGCCATCGCCGTTCCGGAAGCCGTCCGCGAATGCCTCGCGCGGGCGCAGGGGCAGTTGCGCCGTTGTGCGCCGCCGGGCGCGATGCGCTGGACCCGGCCGGAGCAATTCCACCTGACCCTGAAATTTCTCGGCGATGTGCCCGCCGGGCAAATCGCGCGGGTGGAACAATCGCTGAACGACGCTTGCGCCCCGGTTCCGGCCTGGCCGCTTTCCGCCGGGGGAATCGGATTTTTTCCAGGCCGGCACAAACCACGCGTCGTCTGGGCCGGCGTCGCGGATGACGCAAACCGGCTGGCGGAATTGCACCGGCGCATTGACCAGGCGCTGCGGTCTTTTGCCCCGCCGGAGCAGCCGGGCAAATTCACCGGCCACATCACGCTCGGCCGGTTCAAGCCGGGACGGAATCCGGCCCGGCTTGAATTTTGGAAACGCGCCGAGGTTTTGGGCGGACAGCAGTTTGGCCAGTGGACGCCCGCGGCGGTGGAAATTATCCGGTGCGATCTCACGTCCGCCGGCGCCCGGCATACGCGCCTGGCGGCCTGCCCGCTGGCGTTTTGA
PROTEIN sequence
Length: 200
VLDEKASAFQRLFVAIAVPEAVRECLARAQGQLRRCAPPGAMRWTRPEQFHLTLKFLGDVPAGQIARVEQSLNDACAPVPAWPLSAGGIGFFPGRHKPRVVWAGVADDANRLAELHRRIDQALRSFAPPEQPGKFTGHITLGRFKPGRNPARLEFWKRAEVLGGQQFGQWTPAAVEIIRCDLTSAGARHTRLAACPLAF*