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berkeley_reactor_200306_planktonic_scaffold_269654

Search features with annotation key words

Displaying items 31-60 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_269654_31
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50006..50557
DNA (552bp) protein (184aa)
Putative signal peptide protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKW0_THIDA
signal peptide protein
Putative signal peptide protein {ECO:0000313|EMBL:AAZ96662.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
berkeley_reactor_200306_planktonic_scaffold_269654_32
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50532..51380
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Acinetobacter nectaris CIP 110549 RepID=V2TVA0_9GAMM
apbE; thiamine biosynthesis lipoprotein apbE transmembrane
Tax=RBG_16_Gamma2_60_9_curated
berkeley_reactor_200306_planktonic_scaffold_269654_33
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51377..51820
DNA (444bp) protein (148aa)
Putative transmembrane protein n=1 Tax=Ralstonia solanacearum FQY_4 RepID=M4U9S5_RALSL
putative transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:AGH83148.1}; TaxID=1262456 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum FQY_4.;"
berkeley_reactor_200306_planktonic_scaffold_269654_34
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

52216..52893
DNA (678bp) protein (226aa)
High-affinity nickel transporter n=1 Tax=Methylacidiphilum fumariolicum SolV RepID=I0K0B0_9BACT
High-affinity nickel transporter {ECO:0000313|EMBL:CCG92929.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
High-affinity nickel transporter
berkeley_reactor_200306_planktonic_scaffold_269654_35
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

53101..54669
DNA (1569bp) protein (523aa)
Malate dehydrogenase {ECO:0000313|EMBL:EDY21482.1}; EC=1.1.1.37 {ECO:0000313|EMBL:EDY21482.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
malate dehydrogenase (EC:1.1.1.37)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00037C8208
berkeley_reactor_200306_planktonic_scaffold_269654_36
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(54676..55995)
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGD6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60987.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_269654_37
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(56003..57496)
DNA (1494bp) protein (498aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGD5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60986.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_269654_38
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(57550..58149)
DNA (600bp) protein (200aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
2'-5' RNA ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIZ0_9BACT
LigT; 2'-5' RNA ligase
berkeley_reactor_200306_planktonic_scaffold_269654_39
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

58224..59024
DNA (801bp) protein (267aa)
Histidinol phosphate phosphatase HisJ family {ECO:0000313|EMBL:EEF60118.1}; EC=3.1.3.15 {ECO:0000313|EMBL:EEF60118.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Histidinol phosphate phosphatase HisJ family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ80_9BACT
his2; Histidinol phosphatase, PHP family
berkeley_reactor_200306_planktonic_scaffold_269654_40
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

59026..60792
DNA (1767bp) protein (589aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XA99_9BACT
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:EEF63440.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
TPR repeat-containing protein
berkeley_reactor_200306_planktonic_scaffold_269654_41
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

60842..61447
DNA (606bp) protein (202aa)
Phosphoserine phosphatase/homoserine phosphotransferase n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AUF6_9BACT
Phosphoserine phosphatase/homoserine phosphotransferase {ECO:0000313|EMBL:EIP98647.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
thrH; phosphoserine phosphatase
berkeley_reactor_200306_planktonic_scaffold_269654_42
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

61550..62452
DNA (903bp) protein (301aa)
Peptidase M50 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMN1_9BACT
Peptidase M50 {ECO:0000313|EMBL:EEF58930.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_269654_43
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62670..63791
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC PF6_9BURK">RepID=I4MPF6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK91096.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
acyltransferase family protein
berkeley_reactor_200306_planktonic_scaffold_269654_44
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(63808..64785)
DNA (978bp) protein (326aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR52_9BACT
berkeley_reactor_200306_planktonic_scaffold_269654_45
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(64782..65420)
DNA (639bp) protein (213aa)
Glycerol-3-phosphate acyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR53_9BACT
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
plsY; hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_269654_46
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

65518..66552
DNA (1035bp) protein (345aa)
Oxidoreductase domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR54_9BACT
Oxidoreductase domain protein {ECO:0000313|EMBL:EEF57667.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
oxidoreductase
berkeley_reactor_200306_planktonic_scaffold_269654_47
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

67106..67558
DNA (453bp) protein (151aa)
Transposase IS200-family protein n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6ZZX2_MELRP
transposase IS200-family protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
berkeley_reactor_200306_planktonic_scaffold_269654_48
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

67665..68864
DNA (1200bp) protein (400aa)
Lipid-A-disaccharide synthase {ECO:0000313|EMBL:EEF57669.1}; EC=2.4.1.182 {ECO:0000313|EMBL:EEF57669.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Lipid-A-disaccharide synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR56_9BACT
lpxB; Lipid A disaccharide synthetase
berkeley_reactor_200306_planktonic_scaffold_269654_49
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

68907..69158
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJZ0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59813.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_269654_50
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

69270..69755
DNA (486bp) protein (162aa)
Histidine triad (HIT) protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS03_9BACT
Histidine triad (HIT) protein {ECO:0000313|EMBL:EEF57374.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase
berkeley_reactor_200306_planktonic_scaffold_269654_51
unknown

Not on your lists

69817..70017
DNA (201bp) protein (67aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_269654_52
unknown

Not on your lists

70058..70333
DNA (276bp) protein (92aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_269654_53
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

70343..71314
DNA (972bp) protein (324aa)
PhoH family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS04_9BACT
PhoH family protein {ECO:0000313|EMBL:EEF57375.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
phoH; phosphate starvation-inducible protein PhoH, predicted ATPase
berkeley_reactor_200306_planktonic_scaffold_269654_54
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

71410..71913
DNA (504bp) protein (168aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Endoribonuclease YbeY n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS05_9BACT
metal-dependent hydrolase
berkeley_reactor_200306_planktonic_scaffold_269654_55
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71953..74277)
DNA (2325bp) protein (775aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI0003822716
Uncharacterized protein {ECO:0000313|EMBL:KHD03937.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
Na-Ca exchanger/integrin-beta4
berkeley_reactor_200306_planktonic_scaffold_269654_56
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

74450..75115
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS06_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57377.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_269654_57
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

75112..75759
DNA (648bp) protein (216aa)
DNA repair protein RecO n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS07_9BACT
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Recombination protein O RecO
berkeley_reactor_200306_planktonic_scaffold_269654_58
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

75807..78221
DNA (2415bp) protein (805aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Multi-sensor hybrid histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XN54_9BACT
multi-sensor hybrid histidine kinase
berkeley_reactor_200306_planktonic_scaffold_269654_59
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

78281..79282
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKW7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59461.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_269654_60
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79324..80106)
DNA (783bp) protein (261aa)
Exonuclease, RNase T and DNA polymerase III n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VSD3_POLNA
exonuclease
Exonuclease, RNase T and DNA polymerase III {ECO:0000313|EMBL:ABM38561.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
Displaying items 31-60 of 64 in total

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