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berkeley_reactor_200306_planktonic_scaffold_269654

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_269654_1
unknown

Not on your lists

comp(1..81)
DNA (81bp) protein (27aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_269654_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

592..1815
DNA (1224bp) protein (408aa)
Phosphonopyruvate decarboxylase-related protein {ECO:0000313|EMBL:EEF60926.1}; EC=5.4.2.- {ECO:0000313|EMBL:EEF60926.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
phosphoglycerate mutase (EC:5.4.2.1)
Phosphonopyruvate decarboxylase-related protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH05_9BACT
berkeley_reactor_200306_planktonic_scaffold_269654_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

1898..2500
DNA (603bp) protein (201aa)
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHC2_9BACT
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:EEF60757.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
berkeley_reactor_200306_planktonic_scaffold_269654_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(2597..3085)
DNA (489bp) protein (163aa)
XRE family transcriptional regulator n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHC4_9BACT
XRE family transcriptional regulator {ECO:0000313|EMBL:EEF60759.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_269654_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

3196..3744
DNA (549bp) protein (183aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKE2_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF59612.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_269654_6
unknown

Not on your lists

3869..4312
DNA (444bp) protein (148aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_269654_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

4321..5811
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKE0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59610.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_269654_8
R_RIF_OD1_09_41_20, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(5971..6642)
DNA (672bp) protein (224aa)
Phosphatidic acid phosphatase type 2/haloperoxidase id=5096493 bin=PER_GWF2_39_17 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=PER_GWF2_39_17 organism_group=PER (Peregrinibacteria)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_09_41_20_curated
berkeley_reactor_200306_planktonic_scaffold_269654_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(6743..9433)
DNA (2691bp) protein (897aa)
Cell divisionFtsK/SpoIIIE n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHF2_9BACT
Cell divisionFtsK/SpoIIIE {ECO:0000313|EMBL:EEF60787.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cell division protein FtsK
berkeley_reactor_200306_planktonic_scaffold_269654_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

9595..10764
DNA (1170bp) protein (390aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSG1_9BACT
pyrD; dihydroorotate dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_269654_11
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

11227..12081
DNA (855bp) protein (285aa)
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197};; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
Diaminopimelate epimerase n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IZQ9_9BACT
berkeley_reactor_200306_planktonic_scaffold_269654_12
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12124..12384
DNA (261bp) protein (87aa)
Transposase, IS5 family, truncation n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZP59_9PLAN
transposase for insertion sequence element
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
berkeley_reactor_200306_planktonic_scaffold_269654_13
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(12862..14748)
DNA (1887bp) protein (629aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
acetolactate synthase (EC:2.2.1.6)
Acetolactate synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2M1_9BACT
berkeley_reactor_200306_planktonic_scaffold_269654_14
Bdellovibrio bacteriovorus, Bdellovibrio, Bdellovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14919..16388)
DNA (1470bp) protein (490aa)
Glycerol-3-phosphate transporter n=1 Tax=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) RepID=Q6MJ69_BDEBA
glycerol-3-phosphate transporter
Glycerol-3-phosphate transporter {ECO:0000313|EMBL:AHI06089.1}; TaxID=765869 species="Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bdellovibrionaceae; Bdellovibrio.;" source="Bdellovibrio bacteriovorus W.;"
berkeley_reactor_200306_planktonic_scaffold_269654_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

16659..19811
DNA (3153bp) protein (1051aa)
hypothetical protein n=1 Tax=Chlorogloeopsis RepID=UPI0002F24302
PAS domain S-box {ECO:0000313|EMBL:CDM66007.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
multi-sensor hybrid histidine kinase
berkeley_reactor_200306_planktonic_scaffold_269654_16

Not on your lists

comp(20188..21369)
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZP52_OPITP
Marine sediment metagenome DNA, contig: S01H4_C04036 {ECO:0000313|EMBL:GAG65355.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_269654_17
GWB2_Ignavibacteria_35_6b_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(21402..22952)
DNA (1551bp) protein (517aa)
Glycoside hydrolase family 28 n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YDM6_9SPHI
endopolygalacturonase
Tax=GWB2_Ignavibacteria_35_6b_curated
berkeley_reactor_200306_planktonic_scaffold_269654_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(23274..24386)
DNA (1113bp) protein (371aa)
Translation initiation factor, aIF-2BI family {ECO:0000313|EMBL:EEF62982.1}; EC=5.3.1.23 {ECO:0000313|EMBL:EEF62982.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
translation initiation factor, aIF-2BI family (EC:5.3.1.23)
Translation initiation factor, aIF-2BI family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAE7_9BACT
berkeley_reactor_200306_planktonic_scaffold_269654_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(24383..24805)
DNA (423bp) protein (141aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAE6_9BACT
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:EEF62981.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_269654_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

24931..25944
DNA (1014bp) protein (338aa)
Hopanoid-associated sugar epimerase id=3917296 bin=GWC2_Methylomirabilis_70_24 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
NAD-dependent epimerase/dehydratase
Tax=GWA2_Rokubacteria_70_23_curated
berkeley_reactor_200306_planktonic_scaffold_269654_21
unknown

Not on your lists

comp(26192..26866)
DNA (675bp) protein (225aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_269654_22
Plesiomonas shigelloides, Plesiomonas, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26935..29973)
DNA (3039bp) protein (1013aa)
Putative hemolysin n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=B3PD31_CELJU
putative hemolysin
Ig family protein {ECO:0000313|EMBL:EON90288.1}; TaxID=1315976 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Plesiomonas.;" source="Plesiomonas shigelloides 302-73.;"
berkeley_reactor_200306_planktonic_scaffold_269654_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

30385..31473
DNA (1089bp) protein (363aa)
Alanine--glyoxylate transaminase {ECO:0000313|EMBL:EEF59102.1}; EC=2.6.1.44 {ECO:0000313|EMBL:EEF59102.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Alanine--glyoxylate transaminase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLX4_9BACT
serine-pyruvate aminotransferase
berkeley_reactor_200306_planktonic_scaffold_269654_24
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31688..40108
DNA (8421bp) protein (2807aa)
Putative uncharacterized protein id=4791441 bin=GWC2_Geobacteraceae_55_20 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWC2_Geobacteraceae_55_20_curated
berkeley_reactor_200306_planktonic_scaffold_269654_25
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

40189..41061
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLX6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59104.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_269654_26
Oikopleura dioica, Oikopleura, Appendicularia, Chordata, Metazoa

Not on your lists

41113..41358
DNA (246bp) protein (82aa)
Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_156 n=1 Tax=Oikopleura dioica RepID=E4XU32_OIKDI
Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_156 {ECO:0000313|EMBL:CBY13229.1}; TaxID=34765 species="Eukaryota; Metazoa; Chordata; Tunicata; Appendicularia; Oikopleuridae; Oikopleura.;" source="Oikopleura dioica (Tunicate).;"
TM2 domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_269654_27
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

41465..42436
DNA (972bp) protein (324aa)
UDP-glucose 4-epimerase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPR8_9BACT
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EEF58191.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
UDP-glucose 4-epimerase
berkeley_reactor_200306_planktonic_scaffold_269654_28
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

42564..43574
DNA (1011bp) protein (337aa)
NADPH:quinone oxidoreductase n=1 Tax=Chlorogloeopsis RepID=UPI000319DA50
NADPH:quinone oxidoreductase {ECO:0000313|EMBL:KIJ81461.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
Zn-dependent oxidoreductase, NADPH:quinone reductase
berkeley_reactor_200306_planktonic_scaffold_269654_29
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(43594..48906)
DNA (5313bp) protein (1771aa)
Fibronectin type III domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSX1_9BACT
Fibronectin type III domain protein {ECO:0000313|EMBL:EEF57055.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
peptidase S8/S53 subtilisin kexin sedolisin
berkeley_reactor_200306_planktonic_scaffold_269654_30
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

49127..50002
DNA (876bp) protein (292aa)
Conserved hypothetical secreted protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D187_9BACT
Conserved hypothetical secreted protein {ECO:0000313|EMBL:EDY20099.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
Displaying items 1-30 of 64 in total

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