ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_255293_78

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(88623..89666)

Top 3 Functional Annotations

Value Algorithm Source
Secretion protein HlyD n=1 Tax=mine drainage metagenome RepID=T0YI31_9ZZZZ similarity UNIREF
DB: UNIREF100
  • Identity: 52.6
  • Coverage: 308.0
  • Bit_score: 300
  • Evalue 1.60e-78
Secretion protein HlyD {ECO:0000313|EMBL:EQD32718.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.6
  • Coverage: 308.0
  • Bit_score: 300
  • Evalue 2.20e-78
RND family efflux transporter MFP subunit similarity KEGG
DB: KEGG
  • Identity: 29.9
  • Coverage: 318.0
  • Bit_score: 99
  • Evalue 1.50e-18

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

mine drainage metagenome

Sequences

DNA sequence
Length: 1044
ATGAAACTAAAATCCCTCATCCTCACGCTCATCGTGATTTCGCTGGCGGGCTGGGGCATTTATGCCCTGGTCAAGTCACGGGGCACGGACGCCGAACCGGACGCCGCCGCGGAGCCCAGTGTGGTCACGGTTCAAACCGGAACCTTGCAGCGCATGACGCTGCACCGCTATGTCCGTGGTTATGGCACGGTGGCGGCCGCGCCGGCCACCGCCACGCAACCGGCCGCGGACGCGCCGCTGGCTCCGCCGTCCGCCGGCGTCGTGGCCAAAGTGGATGTCGTTGCCGGCCAGCGCGTGCAGGCGGGCGACGTGCTGGTAGAATTGAATTCCGGCGCGGCCACCTTTGCCTACGCGCAGGCCGAGCTGGCGCGGCAGAAACAGTTATTCGCGCAGCACAACACCTCGCTGAAAACGGTGCAGAACGCCGAGGCGCAACTGGCGGCGCTGGAAATCGTTTCGCCGCTGGCCGGCACGGTCACGCGGGTCAACGTCAAGCCCGGCGCGGCGGTGGACACCACCACCGTGGCGGCGGAAGTGATGGATTTGAACCGGCTGGCAGTGCTGACCCAAATTCCCGCGGACCAGGCGGGCGACTTGCAGGCGGGCGACGTGGTGCGGATTGCGACCGGGCCGGACGCGCCGCCCGTTACCGCGCCGCTCGCGTTCGTCAGTCCGGCGGTGAACGCCGGCGACGGGACGGTTTCGGCGTGGGCGGCGCTGCCGGCCGGCAGCGGGCTGCGTCCGGGCGATTTTGTGCGTTTGAAAATTGTCACGCTCACGCACACCAACTGCCTCGCGGCGCCGGCCGCCAGCGTGGTGACGGATGAAAACGGCAACCGGTTCGTGGCGCGGGTCAGCGGCGACATGGCGACGCAGGTGCCGGTGCAAACGGGTTTCAGCGAAGGCGACTGGACGGAGATCGCGGGCACGAATCTGCACGCCGGCGACAGCGTGGTCACCGTTGGTGCCTACGGTTTGCCGGCAACCACCCAGGTGAAAATTGTCCCGGCGGCGGACGAAACCCATTCCGCACCGGCGCAATGA
PROTEIN sequence
Length: 348
MKLKSLILTLIVISLAGWGIYALVKSRGTDAEPDAAAEPSVVTVQTGTLQRMTLHRYVRGYGTVAAAPATATQPAADAPLAPPSAGVVAKVDVVAGQRVQAGDVLVELNSGAATFAYAQAELARQKQLFAQHNTSLKTVQNAEAQLAALEIVSPLAGTVTRVNVKPGAAVDTTTVAAEVMDLNRLAVLTQIPADQAGDLQAGDVVRIATGPDAPPVTAPLAFVSPAVNAGDGTVSAWAALPAGSGLRPGDFVRLKIVTLTHTNCLAAPAASVVTDENGNRFVARVSGDMATQVPVQTGFSEGDWTEIAGTNLHAGDSVVTVGAYGLPATTQVKIVPAADETHSAPAQ*