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berkeley_reactor_200306_planktonic_scaffold_255293

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Displaying items 61-90 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_255293_61
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

65856..66764
DNA (909bp) protein (303aa)
MscS Mechanosensitive ion channel n=1 Tax=Desulfovibrio sp. X2 RepID=S7UZ35_9DELT
mechanosensitive ion channel MscS
Tax=RBG_13_Planctomycetes_62_9_curated
berkeley_reactor_200306_planktonic_scaffold_255293_62
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

66989..68389
DNA (1401bp) protein (467aa)
Xanthine/uracil/vitamin C permease id=3402575 bin=GWF2_Lentisphaerae_57_35 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
Xanthine/uracil/vitamin C permease
Tax=GWF2_Lentisphaerae_57_35_curated
berkeley_reactor_200306_planktonic_scaffold_255293_63
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

68416..70128
DNA (1713bp) protein (571aa)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067}; Short=Adenase {ECO:0000256|HAMAP-Rule:MF_01518};; Short=Adenine aminase {ECO:0000256|HAMAP-Rule:MF_01518};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ade2; adenine deaminase Ade2 (EC:3.5.4.2)
Adenine deaminase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL02_9BACT
berkeley_reactor_200306_planktonic_scaffold_255293_64
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

70234..70701
DNA (468bp) protein (156aa)
CMP/dCMP deaminase zinc-binding n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIB8_9BACT
CMP/dCMP deaminase zinc-binding {ECO:0000313|EMBL:EEF60379.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
guanine deaminase
berkeley_reactor_200306_planktonic_scaffold_255293_trna_2
unknown

Not on your lists

comp(71158..71230)
DNA (73bp)
transferRNA Gly
berkeley_reactor_200306_planktonic_scaffold_255293_65
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(71289..71699)
DNA (411bp) protein (137aa)
Response regulator receiver protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIN4_9BACT
Response regulator receiver protein {ECO:0000313|EMBL:EEF60297.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
response regulator receiver protein
berkeley_reactor_200306_planktonic_scaffold_255293_66
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

71830..72561
DNA (732bp) protein (244aa)
Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Demethylmenaquinone methyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIN5_9BACT
ubiquinone/menaquinone biosynthesis methyltransferase
berkeley_reactor_200306_planktonic_scaffold_255293_67
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

comp(72625..73455)
DNA (831bp) protein (277aa)
Response regulator receiver protein id=4970911 bin=GWA2_Elusimicrobia_69_24 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
Tax=CG_Arma_01
berkeley_reactor_200306_planktonic_scaffold_255293_trna_1
unknown

Not on your lists

comp(73631..73703)
DNA (73bp)
transferRNA Lys
berkeley_reactor_200306_planktonic_scaffold_255293_68
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

73815..74933
DNA (1119bp) protein (373aa)
Permease YjgP/YjgQ family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEL3_9BACT
Permease YjgP/YjgQ family protein {ECO:0000313|EMBL:EEF61727.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative permease
berkeley_reactor_200306_planktonic_scaffold_255293_69
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

75033..76754
DNA (1722bp) protein (574aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
GAF sensor signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEL2_9BACT
GAF sensor signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_255293_70
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

76896..78848
DNA (1953bp) protein (651aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEK8_9BACT
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
berkeley_reactor_200306_planktonic_scaffold_255293_71
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(78969..79946)
DNA (978bp) protein (326aa)
Cyclic pyranopterin phosphate synthase {ECO:0000256|SAAS:SAAS00064088}; EC=4.1.99.18 {ECO:0000256|SAAS:SAAS00064088};; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037D71B2
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_255293_72
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(79956..80195)
DNA (240bp) protein (80aa)
molybdopterin converting factor subunit 1; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] id=14628733 bin=bin8_Chloro species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin8_Chloro organism_group=Chloroflexi
hypothetical protein
Molybdopterin synthase sulfur carrier subunit {ECO:0000256|RuleBase:RU362014}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_255293_73
unknown

Not on your lists

comp(80576..80800)
DNA (225bp) protein (75aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_255293_74
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80877..83960)
DNA (3084bp) protein (1028aa)
Heavy metal efflux pump, cobalt-zinc-cadmium n=1 Tax=Rhodanobacter denitrificans RepID=M4NHM9_9GAMM
Heavy metal efflux pump, cobalt-zinc-cadmium {ECO:0000313|EMBL:AGG89163.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
heavy metal efflux pump, cobalt-zinc-cadmium
berkeley_reactor_200306_planktonic_scaffold_255293_75
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(83998..84993)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPS0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58193.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_255293_76
Burkholderia sacchari, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84990..85493)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4Y4_9BRAD
Membrane protein {ECO:0000313|EMBL:KHD18223.1}; TaxID=159450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sacchari.;"
membrane protein
berkeley_reactor_200306_planktonic_scaffold_255293_77
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(85519..88626)
DNA (3108bp) protein (1036aa)
acriflavin resistance protein n=1 Tax=unclassified Aminicenantes RepID=UPI0003B76130
acriflavin resistance protein
Tax=RBG_13_Planctomycetes_50_24_curated
berkeley_reactor_200306_planktonic_scaffold_255293_78

Not on your lists

comp(88623..89666)
DNA (1044bp) protein (348aa)
Secretion protein HlyD n=1 Tax=mine drainage metagenome RepID=T0YI31_9ZZZZ
Secretion protein HlyD {ECO:0000313|EMBL:EQD32718.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RND family efflux transporter MFP subunit
berkeley_reactor_200306_planktonic_scaffold_255293_79

Not on your lists

comp(89663..91069)
DNA (1407bp) protein (469aa)
Divalent cation resistant determinant protein C n=1 Tax=mine drainage metagenome RepID=T0YPB3_9ZZZZ
Divalent cation resistant determinant protein C {ECO:0000313|EMBL:EQD37396.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
outer membrane protein
berkeley_reactor_200306_planktonic_scaffold_255293_80
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(91066..92157)
DNA (1092bp) protein (364aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE95_9BACT
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_255293_81
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(92154..92828)
DNA (675bp) protein (225aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE94_9BACT
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EEF61985.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PhoB family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_255293_82
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(92872..93462)
DNA (591bp) protein (197aa)
Tax=RBG_16_Planctomycetes_55_9_curated
berkeley_reactor_200306_planktonic_scaffold_255293_83
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(93512..94519)
DNA (1008bp) protein (336aa)
YVTN beta-propeller repeat-containing protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XD71_9BACT
YVTN beta-propeller repeat-containing protein {ECO:0000313|EMBL:EEF62017.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_255293_84
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(94613..94960)
DNA (348bp) protein (116aa)
Propeptide PepSY amd peptidase M4 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE92_9BACT
Propeptide PepSY amd peptidase M4 {ECO:0000313|EMBL:EEF61983.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PepSY domain protein
berkeley_reactor_200306_planktonic_scaffold_255293_85
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(95103..96113)
DNA (1011bp) protein (337aa)
YVTN beta-propeller repeat-containing protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XD71_9BACT
YVTN beta-propeller repeat-containing protein {ECO:0000313|EMBL:EEF62017.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_255293_86
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


96288..97388
DNA (1101bp) protein (367aa)
recA protein (EC:3.6.3.8)
Protein RecA n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF42_9BACT
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_255293_87
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

97521..99323
DNA (1803bp) protein (601aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNT2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58505.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_255293_88
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

99629..100873
DNA (1245bp) protein (415aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNT1_9BACT
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:EEF58504.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DEAD/DEAH box helicase
Displaying items 61-90 of 93 in total

View Taxonomy