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berkeley_reactor_200306_planktonic_scaffold_255293

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Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_255293_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(169..1710)
DNA (1542bp) protein (514aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRJ2_9BACT
GMP synthase
berkeley_reactor_200306_planktonic_scaffold_255293_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

1880..2476
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLK6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59254.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
prepilin-type N-terminal cleavage/methylation domain
berkeley_reactor_200306_planktonic_scaffold_255293_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2481..4772
DNA (2292bp) protein (764aa)
Pyrrolo-quinoline quinone n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLK5_9BACT
Pyrrolo-quinoline quinone {ECO:0000313|EMBL:EEF59253.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_255293_4
unknown

Not on your lists

comp(4783..5163)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI000378B75B
berkeley_reactor_200306_planktonic_scaffold_255293_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(5208..7307)
DNA (2100bp) protein (700aa)
ATP-dependent DNA helicase RecG n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRJ4_9BACT
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:EEF57565.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DEAD/DEAH box helicase
berkeley_reactor_200306_planktonic_scaffold_255293_6
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

comp(7333..8115)
DNA (783bp) protein (261aa)
Metallophosphoesterase n=1 Tax=Crinalium epipsammum PCC 9333 RepID=K9VYM7_9CYAN
metallophosphoesterase
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
berkeley_reactor_200306_planktonic_scaffold_255293_7
unknown

Not on your lists

comp(8112..8324)
DNA (213bp) protein (71aa)
Protein SlyX homolog n=1 Tax=Aeromonas media WS RepID=K2ICW9_AERME
SlyX superfamily
berkeley_reactor_200306_planktonic_scaffold_255293_8
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(8391..10064)
DNA (1674bp) protein (558aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC83173.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
Pectate lyase id=2231574 bin=GWA2_Ignavibacteriae_54_16_partial species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Ignavibacteriae_54_16_partial organism_group=Ignavibacteria
berkeley_reactor_200306_planktonic_scaffold_255293_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

10312..11550
DNA (1239bp) protein (413aa)
Phosphoribosylamine--glycine ligase {ECO:0000313|EMBL:EEF58950.1}; EC=6.3.4.13 {ECO:0000313|EMBL:EEF58950.1};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Phosphoribosylamine--glycine ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMA8_9BACT
phosphoribosylamine--glycine ligase
berkeley_reactor_200306_planktonic_scaffold_255293_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

11628..12815
DNA (1188bp) protein (396aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMA7_9BACT
berkeley_reactor_200306_planktonic_scaffold_255293_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

12852..13652
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMA6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58948.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_255293_12
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(13649..14620)
DNA (972bp) protein (324aa)
tRNA-dihydrouridine synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLX7_9BACT
dihydrouridine synthase
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_255293_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(14854..15156)
DNA (303bp) protein (101aa)
PUR-alpha/beta/gamma DNA/RNA-binding n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK33_9BACT
PUR-alpha/beta/gamma DNA/RNA-binding {ECO:0000313|EMBL:EEF59856.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PurA family ssDNA and RNA-binding protein
berkeley_reactor_200306_planktonic_scaffold_255293_14
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(15717..16349)
DNA (633bp) protein (211aa)
SNARE associated Golgi protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDL1_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_255293_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(16435..17973)
DNA (1539bp) protein (513aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDL3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62159.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_255293_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(18068..19009)
DNA (942bp) protein (314aa)
Phage SPO1 DNA polymerase-related protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDL4_9BACT
Phage SPO1 DNA polymerase-related protein {ECO:0000313|EMBL:EEF62160.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Uracil-DNA glycosylase
berkeley_reactor_200306_planktonic_scaffold_255293_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(19258..19932)
DNA (675bp) protein (225aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH84_9BACT
aat; Leu/Phe-tRNA-protein transferase
berkeley_reactor_200306_planktonic_scaffold_255293_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(19925..20413)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH83_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60718.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_255293_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(20410..20721)
DNA (312bp) protein (104aa)
ATP-dependent Clp protease adaptor protein ClpS n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH82_9BACT
ATP-dependent Clp protease adaptor protein ClpS {ECO:0000313|EMBL:EEF60717.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
clpS; ATP-dependent Clp protease adapter protein
berkeley_reactor_200306_planktonic_scaffold_255293_20
RIFOXYA2_FULL_Elusimicrobia_53_38_curated, Elusimicrobia, Bacteria

Not on your lists

comp(20752..20973)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PJ72_9BACT
hypothetical protein
Tax=RIFOXYA2_FULL_Elusimicrobia_53_38_curated
berkeley_reactor_200306_planktonic_scaffold_255293_21
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(21010..21735)
DNA (726bp) protein (242aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1ISF6_9BACT
metal-dependent hydrolase
Putative metal-dependent hydrolase {ECO:0000313|EMBL:EIP98482.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
berkeley_reactor_200306_planktonic_scaffold_255293_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(21787..23403)
DNA (1617bp) protein (539aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLQ1_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF59299.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter
berkeley_reactor_200306_planktonic_scaffold_255293_23
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24038..25690
DNA (1653bp) protein (551aa)
pgi; glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase id=2052249 bin=GWA2_Bacteroidetes_A19_40_15 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Bacteroidetes_A19_40_15 organism_group=Bacteroidetes
Tax=GWA2_Bacteroidetes_40_15_curated
berkeley_reactor_200306_planktonic_scaffold_255293_24

Not on your lists

25940..26617
DNA (678bp) protein (226aa)
6-phosphogluconolactonase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H7W7_ANADF
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49095.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
6-phosphogluconolactonase
berkeley_reactor_200306_planktonic_scaffold_255293_25
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(26840..28678)
DNA (1839bp) protein (613aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKE4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59614.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_255293_26
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(29203..29715)
DNA (513bp) protein (171aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKE6_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF59616.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ECF subfamily RNA polymerase sigma-24 subunit
berkeley_reactor_200306_planktonic_scaffold_255293_27
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

29980..30624
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHW0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60453.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_255293_28
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(30745..31431)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIS0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60333.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_255293_29
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(31470..32255)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIS2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60335.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_255293_30
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32233..33129)
DNA (897bp) protein (299aa)
Gram-positive signal peptide protein, YSIRK family n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GCU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KHD05565.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
hypothetical protein
Displaying items 1-30 of 93 in total

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