ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_255293

Search features with annotation key words

Displaying items 31-60 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_255293_31
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(33126..33995)
DNA (870bp) protein (290aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIS3_9BACT
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
berkeley_reactor_200306_planktonic_scaffold_255293_32
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(34072..34380)
DNA (309bp) protein (103aa)
Transcriptional regulator, MarR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIS4_9BACT
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EEF60337.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_255293_33
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(34377..35015)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIS5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60338.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_255293_34
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

35090..35500
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGU3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60864.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_255293_35
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35581..36090)
DNA (510bp) protein (170aa)
putative enzyme (EC:3.1.3.-)
Putative phosphohistidine phosphatase, SixA n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSS2_9BACT
Tax=GWD2_Deltaproteobacteria_55_8_curated
berkeley_reactor_200306_planktonic_scaffold_255293_36
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

36191..37126
DNA (936bp) protein (312aa)
Ppx/GppA phosphatase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XME8_9BACT
Ppx/GppA phosphatase {ECO:0000313|EMBL:EEF58990.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Ppx/GppA family phosphatase
berkeley_reactor_200306_planktonic_scaffold_255293_37
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

37262..38239
DNA (978bp) protein (326aa)
transporter n=1 Tax=Methylobacter marinus RepID=UPI00035E2963
bile acid:sodium symporter
Bile acid:sodium symporter {ECO:0000313|EMBL:ACB77371.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_255293_38
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(38205..39488)
DNA (1284bp) protein (428aa)
FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XI45_9BACT
FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:EEF60538.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
berkeley_reactor_200306_planktonic_scaffold_255293_39
RBG_13_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

39603..40445
DNA (843bp) protein (281aa)
Uncharacterized membrane protein, predicted transporter id=4019678 bin=GWF2_Syntrophobacterales_56_9 species=Methylacidiphilum infernorum genus=Methylacidiphilum taxon_order=Methylacidiphilales taxon_class=unknown phylum=Verrucomicrobia tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
membrane protein
Tax=RBG_13_Ignavibacteria_36_8_curated
berkeley_reactor_200306_planktonic_scaffold_255293_40
Coraliomargarita sp. CAG:312, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

40656..41609
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Coraliomargarita sp. CAG:312 RepID=R7LAP8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDE85048.1}; TaxID=1262865 species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita; environmental samples.;" source="Coraliomargarita sp. CAG:312.;"
berkeley_reactor_200306_planktonic_scaffold_255293_41
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41599..42003)
DNA (405bp) protein (135aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
PilT domain-containing protein n=1 Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0FT33_9DELT
PilT domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_255293_42
unknown

Not on your lists

comp(42000..42209)
DNA (210bp) protein (70aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_255293_43
unknown

Not on your lists

comp(42342..42854)
DNA (513bp) protein (171aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_255293_44
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(43170..43421)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6GZR5_FLAPJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCY74366.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
berkeley_reactor_200306_planktonic_scaffold_255293_45
Capnocytophaga sp. oral taxon 863, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(43446..44459)
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Capnocytophaga sp. oral taxon 863 str. F0517 RepID=U2C313_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ERI63652.1}; TaxID=1227266 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga sp. oral taxon 863 str. F0517.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_255293_46
delta proteobacterium MLMS-1, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44600..45337)
DNA (738bp) protein (246aa)
Metallophosphoesterase n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NN78_9DELT
Metallophosphoesterase {ECO:0000313|EMBL:EAT03161.1}; TaxID=262489 species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium MLMS-1.;"
metallophosphoesterase
berkeley_reactor_200306_planktonic_scaffold_255293_47
GWF2_Lentisphaerae_52_8_curated, Lentisphaerae, Bacteria

Not on your lists

comp(45378..46241)
DNA (864bp) protein (288aa)
id=4430457 bin=GWF2_Lentisphaerae_52_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
Tax=GWF2_Lentisphaerae_52_8_curated
berkeley_reactor_200306_planktonic_scaffold_255293_48
Veillonella sp. CAG:933, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(46291..46857)
DNA (567bp) protein (189aa)
DNA polymerase III epsilon-like protein (EC:2.7.7.7)
Exonuclease n=1 Tax=Veillonella sp. CAG:933 RepID=R5BUD6_9FIRM
Exonuclease {ECO:0000313|EMBL:CCX56332.1}; TaxID=1262980 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella; environmental samples.;" source="Veillonella sp. CAG:933.;"
berkeley_reactor_200306_planktonic_scaffold_255293_49
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(46854..47315)
DNA (462bp) protein (154aa)
hypothetical protein
Tax=GWF2_Lentisphaerae_50_93_curated
berkeley_reactor_200306_planktonic_scaffold_255293_50
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

47632..48231
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCS9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62275.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_255293_51
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

48353..49486
DNA (1134bp) protein (378aa)
Cyclic dehypoxanthine futalosine synthase {ECO:0000256|HAMAP-Rule:MF_00992}; Short=Cyclic DHFL synthase {ECO:0000256|HAMAP-Rule:MF_00992};; EC=1.21.98.1 {ECO:0000256|HAMAP-Rule:MF_00992};; Dehypoxanthine futalosine cyclase {ECO:0000256|HAMAP-Rule:MF_00992}; Menaquinone biosynthetic enzyme MqnC {ECO:0000256|HAMAP-Rule:MF_00992}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Radical SAM domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIR1_9BACT
menaquinone biosynthesis protein
berkeley_reactor_200306_planktonic_scaffold_255293_52
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(49566..52982)
DNA (3417bp) protein (1139aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ89_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60127.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_255293_53
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

53165..56476
DNA (3312bp) protein (1104aa)
PAS domain S-box n=1 Tax=Chthonomonas calidirosea T49 RepID=S0ETM6_9BACT
PAS domain S-box
PAS domain S-box {ECO:0000313|EMBL:CCW34875.1}; TaxID=1303518 species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
berkeley_reactor_200306_planktonic_scaffold_255293_54
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(56473..56955)
DNA (483bp) protein (161aa)
Molybdenum cofactor synthesis domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3W5_9BACT
molybdopterin adenylyltransferase
Molybdenum cofactor synthesis domain protein {ECO:0000313|EMBL:EDY18945.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_255293_55
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(56952..57401)
DNA (450bp) protein (150aa)
Molybdenum cofactor biosynthesis protein C n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3W4_9BACT
Molybdenum cofactor biosynthesis protein C {ECO:0000313|EMBL:EDY18944.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
putative molybdenum cofactor biosynthesis protein C
berkeley_reactor_200306_planktonic_scaffold_255293_56
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(57438..59144)
DNA (1707bp) protein (569aa)
Molybdenum cofactor synthesis domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUD9_9BACT
Molybdenum cofactor synthesis domain protein {ECO:0000313|EMBL:EDY22177.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
molybdenum cofactor synthesis domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_255293_57
Oscillatoria nigro-viridis, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(59309..60100)
DNA (792bp) protein (264aa)
Hydrogenase nickel incorporation protein HypB n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VCS9_9CYAN
Hydrogenase nickel incorporation protein HypB
Hydrogenase nickel incorporation protein HypB {ECO:0000313|EMBL:AFZ05968.1}; TaxID=179408 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria nigro-viridis PCC 7112.;"
berkeley_reactor_200306_planktonic_scaffold_255293_58
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(60110..60451)
DNA (342bp) protein (114aa)
Probable hydrogenase nickel incorporation protein HypA n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WH16_9CYAN
Hydrogenase-3 nickel incorporation protein HypA
Probable hydrogenase nickel incorporation protein HypA {ECO:0000256|HAMAP-Rule:MF_00213}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
berkeley_reactor_200306_planktonic_scaffold_255293_59
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

60650..63379
DNA (2730bp) protein (910aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI0003648053
Glycoside hydrolase, family 63 {ECO:0000313|EMBL:AHG93207.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Glycoside hydrolase, family 63
berkeley_reactor_200306_planktonic_scaffold_255293_60
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

63465..65660
DNA (2196bp) protein (732aa)
Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JDN9_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:EDY82266.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
hypothetical protein
Displaying items 31-60 of 93 in total

View Taxonomy