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berkeley_reactor_200306_planktonic_scaffold_310271_25

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 34339..35256

Top 3 Functional Annotations

Value Algorithm Source
LysR family transcriptional regulator n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745DD5 similarity UNIREF
DB: UNIREF100
  • Identity: 40.9
  • Coverage: 281.0
  • Bit_score: 208
  • Evalue 7.20e-51
Transcriptional regulator {ECO:0000313|EMBL:CDM66657.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 39.5
  • Coverage: 281.0
  • Bit_score: 211
  • Evalue 1.20e-51
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 36.7
  • Coverage: 281.0
  • Bit_score: 179
  • Evalue 1.00e-42

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Taxonomy

Pyrinomonas methylaliphatogenes → Pyrinomonas → Acidobacteria → Bacteria

Sequences

DNA sequence
Length: 918
ATGGAGGTGGCAAAACGGGGGAGCTTTAGCAAAGCCGCCTCGCATTGCCACACTTCCCAATCCAATATAAGCGAACAGATCCAAAAACTTGAAAGGCGGGTCGGACAATTATTATTCGAGCGCCACCGCCGAAGAACCGTGCTAACGGAGGCCGGGGAAATTCTTTTCCGACGAGGGGAGGTAATTTTAGCCGAAATGGAAGACGCCAAACAAGAAATCCGCAGCGTTGGCAGAAAGAAAGCAGGGAAAGTATTGGTTGGCGTCCTGATGACCATTGCGCCGTGTTTTCTGGTCCACGTGCTGAATTCGTTTGTTGAACTGTTCCCGGAAATTCAAGTGCATTTCTTTGAGACGACCACGGCGCTAATGTTAAGCATGCTGGACGCTGGCAAACTGGACCTGTGCATCACCAGCTTGCCCATCCGGGAAAATGGCTTTGAGACTGAAAAATTGTTTTCCGAAGAAATGCTGCTGGCACTGCCTCTATGTCATCCCCTCACCCGCAAGCGGGCGATATACAAGAAAGATTTGGAATCGGAAAAATTCATCCTCTCAAAAGAAGACCATTGTTCAGGCGGATGTGCCCTTGGCTTAAACCGACGAAACAATTTTTCACCACGCATCATGTTCCAATGTGGCCGATTGGCCACCATCCAATCACTGGTGGCAGCAGGCAAGGGAATTTCACTCATACCACAAACAGCTATTGAGCAAACAACCGCCGACATCGCCTATCGCCAGATGGAAAATCCCCGGCCAAAACGCTCCATAGCCGTTGTGACTAGGCACAAGCGCCCGCCCAAACCGGTTGCACAGGAATTTCTTCAACATTTAAGGGAGGCCAGGCAAACATTTAAATTGCCAGCAGCAAACCACCATGCGCACCAGGCACTGAATAAAGCACCGGCTTCCAAGTGA
PROTEIN sequence
Length: 306
MEVAKRGSFSKAASHCHTSQSNISEQIQKLERRVGQLLFERHRRRTVLTEAGEILFRRGEVILAEMEDAKQEIRSVGRKKAGKVLVGVLMTIAPCFLVHVLNSFVELFPEIQVHFFETTTALMLSMLDAGKLDLCITSLPIRENGFETEKLFSEEMLLALPLCHPLTRKRAIYKKDLESEKFILSKEDHCSGGCALGLNRRNNFSPRIMFQCGRLATIQSLVAAGKGISLIPQTAIEQTTADIAYRQMENPRPKRSIAVVTRHKRPPKPVAQEFLQHLREARQTFKLPAANHHAHQALNKAPASK*