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berkeley_reactor_200306_planktonic_scaffold_310271

Search features with annotation key words

Displaying items 1-30 of 105 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_310271_1
unknown

Not on your lists

comp(3..83)
DNA (81bp) protein (27aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_310271_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

319..2166
DNA (1848bp) protein (616aa)
DNA topoisomerase type IIA subunit B region 2 domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEN8_9BACT
DNA topoisomerase type IIA subunit B region 2 domain protein {ECO:0000313|EMBL:EEF61752.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
parE; DNA topoisomerase 4 subunit B
berkeley_reactor_200306_planktonic_scaffold_310271_3
unknown

Not on your lists

comp(2127..2216)
DNA (90bp) protein (30aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_310271_4
RifOxyB12_full_OP3_50_7_curated, Omnitrophica, Bacteria

Not on your lists

comp(2213..4327)
DNA (2115bp) protein (705aa)
Tax=RifOxyB12_full_OP3_50_7_curated
berkeley_reactor_200306_planktonic_scaffold_310271_5
unknown

Not on your lists

4807..5028
DNA (222bp) protein (74aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_310271_6

Not on your lists

5025..5426
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Pleurocapsa sp. PCC 7319 RepID=UPI00034B3056
Marine sediment metagenome DNA, contig: S01H1_S38526 {ECO:0000313|EMBL:GAG50444.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
sll1715; hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_310271_7
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5508..6860)
DNA (1353bp) protein (451aa)
cysteine desulfurase NifS (EC:2.8.1.7)
Aromatic amino acid beta-eliminating lyase/threonine aldolase id=4501210 bin=GWA2_Deltaproteo_65_63 species=unknown genus=Lyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
Tax=GWA2_Deltaproteobacteria_65_63_curated
berkeley_reactor_200306_planktonic_scaffold_310271_8
RLO_PLX_64_10, Bacteria

Not on your lists

comp(6893..8389)
DNA (1497bp) protein (499aa)
carboxypeptidase Taq (EC:3.4.17.19)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI0003795227
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
berkeley_reactor_200306_planktonic_scaffold_310271_9
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

8590..11517
DNA (2928bp) protein (976aa)
Regulator of chromosome condensation RCC1 n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IIH9_9CHLR
Regulator of chromosome condensation RCC1 {ECO:0000313|EMBL:EFO79054.1}; TaxID=765420 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Oscillochloris trichoides DG-6.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_310271_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

11528..14914
DNA (3387bp) protein (1129aa)
Immunoglobulin I-set domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJD9_9BACT
Immunoglobulin I-set domain protein {ECO:0000313|EMBL:EEF60000.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_310271_11
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

14883..15242
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XC45_9BACT
hypothetical protein
Tax=RBG_16_Zixibacteria_53_22_curated
berkeley_reactor_200306_planktonic_scaffold_310271_12
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

15507..18131
DNA (2625bp) protein (875aa)
Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JEH9_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:EDY80821.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_310271_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(18479..18895)
DNA (417bp) protein (139aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Putative Holliday junction resolvase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDA0_9BACT
rnhD; RNase H-like ribonuclease
berkeley_reactor_200306_planktonic_scaffold_310271_14
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(19202..19660)
DNA (459bp) protein (153aa)
DoxX subfamily, putative n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JK91_9BACT
DoxX protein
Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
berkeley_reactor_200306_planktonic_scaffold_310271_15
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

comp(19754..20326)
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Fischerella muscicola RepID=UPI0002F44FDD
NADPH-dependent FMN reductase {ECO:0000313|EMBL:KIY10950.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
NADPH-dependent FMN reductase
berkeley_reactor_200306_planktonic_scaffold_310271_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(20373..20828)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XM79_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59072.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_310271_17
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(20939..21706)
DNA (768bp) protein (256aa)
Pirin domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D611_9BACT
Pirin domain protein {ECO:0000313|EMBL:EDY18214.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Pirin-like protein
berkeley_reactor_200306_planktonic_scaffold_310271_18

Not on your lists

21916..23097
DNA (1182bp) protein (394aa)
Marine sediment metagenome DNA, contig: S01H1_C00261 {ECO:0000313|EMBL:GAF74553.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Transposase for insertion sequence element IS406 id=2214469 bin=GWB2_Chloroflexi_54_36 species=Burkholderia multivorans genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
IS406 transposase
berkeley_reactor_200306_planktonic_scaffold_310271_19
unknown

Not on your lists

23505..24050
DNA (546bp) protein (182aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_310271_trna_2
unknown

Not on your lists

comp(27036..27109)
DNA (74bp)
transferRNA Ile
berkeley_reactor_200306_planktonic_scaffold_310271_trna_1
unknown

Not on your lists

comp(27121..27193)
DNA (73bp)
transferRNA Ala
berkeley_reactor_200306_planktonic_scaffold_310271_16S_1
unknown

Not on your lists

comp(27383..28914)
DNA (1532bp)
16S ribosomal RNA (16S rRNA)
berkeley_reactor_200306_planktonic_scaffold_310271_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

29947..31425
DNA (1479bp) protein (493aa)
Integrase family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSZ3_9BACT
Integrase family protein {ECO:0000313|EMBL:EEF57028.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
integrase
berkeley_reactor_200306_planktonic_scaffold_310271_21
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(31742..32947)
DNA (1206bp) protein (402aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IYY6_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF89874.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_310271_22
unknown

Not on your lists

comp(32961..33566)
DNA (606bp) protein (202aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_310271_23
unknown

Not on your lists

comp(33573..33797)
DNA (225bp) protein (75aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_310271_24
unknown

Not on your lists

comp(33886..34077)
DNA (192bp) protein (64aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_310271_25
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

34339..35256
DNA (918bp) protein (306aa)
LysR family transcriptional regulator n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745DD5
Transcriptional regulator {ECO:0000313|EMBL:CDM66657.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
LysR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_310271_26
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(35831..36205)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CXN5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY21033.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_310271_27
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

comp(36237..37091)
DNA (855bp) protein (285aa)
Putative uncharacterized protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WU00_GEOS8
hypothetical protein
Tax=GWB2_Clostridiales_37_7_curated
Displaying items 1-30 of 105 in total

View Taxonomy