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berkeley_reactor_200306_planktonic_scaffold_310271

Search features with annotation key words

Displaying items 61-90 of 105 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_310271_58
unknown

Not on your lists

65384..65590
DNA (207bp) protein (69aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_310271_59
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65600..65959
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-M04 RepID=UPI00037EA267
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD94025.1}; TaxID=398767 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
berkeley_reactor_200306_planktonic_scaffold_310271_60
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

comp(65956..66369)
DNA (414bp) protein (138aa)
DNA G:T-mismatch repair endonuclease id=1699212 bin=GWB2_Chloroflexi_49_20 species=Achromobacter xylosoxidans genus=Achromobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
DNA mismatch repair protein Vsr
Tax=GWC2_Chloroflexi_49_37_curated
berkeley_reactor_200306_planktonic_scaffold_310271_61
Grimontia indica, Grimontia, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66422..67525)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Grimontia sp. AK16 RepID=R1GX22_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EOD80723.1}; TaxID=1056512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Grimontia.;" source="Grimontia indica.;"
berkeley_reactor_200306_planktonic_scaffold_310271_62
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67551..70412)
DNA (2862bp) protein (954aa)
Signal transduction histidine kinase n=2 Tax=Pseudomonas RepID=J2MH13_9PSED
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35695.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
histidine kinase
berkeley_reactor_200306_planktonic_scaffold_310271_63
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

comp(70480..72006)
DNA (1527bp) protein (509aa)
C-5 cytosine-specific DNA methylase id=2140531 bin=GWD2_Chloroflexi_49_16 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
DNA-cytosine methyltransferase
Tax=GWC2_Chloroflexi_49_37_curated
berkeley_reactor_200306_planktonic_scaffold_310271_64
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(72017..74122)
DNA (2106bp) protein (702aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI000345B846
AIPR protein
AIPR protein {ECO:0000313|EMBL:AFZ19205.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
berkeley_reactor_200306_planktonic_scaffold_310271_65
Methanolacinia petrolearia, Methanolacinia, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(74115..75137)
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) RepID=E1RKA1_METP4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADN36914.1}; TaxID=679926 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanolacinia.;" source="Methanolacinia petrolearia (strain DSM 11571 / OCM 486 / SEBR 4847); (Methanoplanus petrolearius).;"
berkeley_reactor_200306_planktonic_scaffold_310271_66
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75124..77985)
DNA (2862bp) protein (954aa)
Putative uncharacterized protein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D6D3_MYXXD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF90915.1}; TaxID=246197 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus xanthus (strain DK 1622).;"
berkeley_reactor_200306_planktonic_scaffold_310271_67
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(77975..79474)
DNA (1500bp) protein (500aa)
Molecular chaperone of HSP90 family n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WG90_9CYAN
molecular chaperone of HSP90 family
Molecular chaperone of HSP90 family {ECO:0000313|EMBL:AFZ19208.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
berkeley_reactor_200306_planktonic_scaffold_310271_68
Tribolium castaneum, Tribolium, Coleoptera, Neoptera, Arthropoda, Metazoa

Not on your lists

79820..81142
DNA (1323bp) protein (441aa)
Putative uncharacterized protein n=1 Tax=Tribolium castaneum RepID=D6WFK8_TRICA
Putative uncharacterized protein {ECO:0000313|EMBL:EFA00936.1}; TaxID=7070 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium.;" source="Tribolium castaneum (Red flour beetle).;"
FOG: Ankyrin repeat
berkeley_reactor_200306_planktonic_scaffold_310271_69
unknown

Not on your lists

81469..82449
DNA (981bp) protein (327aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_310271_70
alpha proteobacterium Q-1, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82446..84161
DNA (1716bp) protein (572aa)
Relaxase/mobilization nuclease topoisomerase/primase fusion protein n=1 Tax=Salmonella enterica subsp. enterica serovar Westhampton RepID=B7NZZ4_SALET
DNA primase {ECO:0000313|EMBL:GAK34375.1}; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
Relaxase/mobilization nuclease family protein
berkeley_reactor_200306_planktonic_scaffold_310271_71
Penicillium brasilianum, Penicillium, Eurotiales, Eurotiomycetidae, Ascomycota, Fungi

Not on your lists

84448..85764
DNA (1317bp) protein (439aa)
Repeat protein n=1 Tax=Moumouvirus goulette RepID=M1PBK8_9VIRU
Uncharacterized protein {ECO:0000313|EMBL:CEO59719.1}; TaxID=104259 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium.;" source="Penicillium brasilianum.;"
ankyrin containing protein
berkeley_reactor_200306_planktonic_scaffold_310271_72
unknown

Not on your lists

85769..86170
DNA (402bp) protein (134aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_310271_73
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

86197..86817
DNA (621bp) protein (207aa)
DNA repair protein RadC n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSW5_9BACT
DNA repair protein RadC {ECO:0000313|EMBL:EEF57074.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA repair protein RadC
berkeley_reactor_200306_planktonic_scaffold_310271_74
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

86810..92458
DNA (5649bp) protein (1883aa)
Uncharacterized protein n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L2V0_METHD
hypothetical protein
Outer membrane protein {ECO:0000313|EMBL:EDY19316.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_310271_75
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92744..92899
DNA (156bp) protein (52aa)
Tax=BJP_08E140C01_Dechloromonas_61_78
berkeley_reactor_200306_planktonic_scaffold_310271_76
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

93367..93987
DNA (621bp) protein (207aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Phosphoribosylglycinamide formyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGC1_9BACT
phosphoribosylglycinamide formyltransferase
berkeley_reactor_200306_planktonic_scaffold_310271_77
unknown

Not on your lists

93998..94525
DNA (528bp) protein (176aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_310271_78
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

94650..95525
DNA (876bp) protein (292aa)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_00079};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_00079};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ATP phosphoribosyltransferase (EC:2.4.2.17)
ATP phosphoribosyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGC0_9BACT
berkeley_reactor_200306_planktonic_scaffold_310271_79
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(96188..97396)
DNA (1209bp) protein (403aa)
Transporter, MscS family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JL21_9BACT
Transporter, MscS family {ECO:0000313|EMBL:EDY84329.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
small-conductance mechanosensitive ion channel
berkeley_reactor_200306_planktonic_scaffold_310271_80
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(97736..100093)
DNA (2358bp) protein (786aa)
Cytochrome c-552 {ECO:0000256|SAAS:SAAS00233541}; EC=1.-.-.- {ECO:0000256|SAAS:SAAS00275652};; EC=1.7.2.2 {ECO:0000256|SAAS:SAAS00233490};; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-N20 RepID=UPI000379B0BD
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_310271_81
Rhodopirellula maiorica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(100190..100951)
DNA (762bp) protein (254aa)
AraC family transcriptional regulator id=12554241 bin=CNBR_ACIDO species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EMI21259.1}; TaxID=1265738 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula maiorica SM1.;"
AraC family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_310271_82
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

101043..101984
DNA (942bp) protein (314aa)
Proline racemase {ECO:0000313|EMBL:CDM64743.1}; EC=5.1.1.8 {ECO:0000313|EMBL:CDM64743.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Proline racemase n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AZJ3_HERA2
proline racemase
berkeley_reactor_200306_planktonic_scaffold_310271_83
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

101986..103245
DNA (1260bp) protein (420aa)
FAD-dependent oxidoreductase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746BAB
FAD dependent oxidoreductase {ECO:0000313|EMBL:EDY20793.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
FAD dependent oxidoreductase
berkeley_reactor_200306_planktonic_scaffold_310271_84
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

103277..104170
DNA (894bp) protein (298aa)
Dihydrodipicolinate synthase/N-acetylneuraminate lyase {ECO:0000313|EMBL:CDM64747.1}; EC=4.3.3.7 {ECO:0000313|EMBL:CDM64747.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00035DAD15
dihydrodipicolinate synthase
berkeley_reactor_200306_planktonic_scaffold_310271_85

Not on your lists

comp(104344..105012)
DNA (669bp) protein (223aa)
Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=uncultured bacterium RepID=K1YZG0_9BACT
RodK {ECO:0000313|EMBL:KKT49904.1}; TaxID=1618969 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_44_17.;"
response regulator receiver protein
berkeley_reactor_200306_planktonic_scaffold_310271_86
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(105190..105876)
DNA (687bp) protein (229aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EP66_CORAD
peptide methionine sulfoxide reductase
berkeley_reactor_200306_planktonic_scaffold_310271_87
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(105919..106131)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWC7_9BACT
DNA gyrase inhibitor YacG {ECO:0000256|SAAS:SAAS00085446}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
yacG; hypothetical protein
Displaying items 61-90 of 105 in total

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