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berkeley_reactor_200306_planktonic_scaffold_310271_62

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(67551..70412)

Top 3 Functional Annotations

Value Algorithm Source
Signal transduction histidine kinase n=2 Tax=Pseudomonas RepID=J2MH13_9PSED similarity UNIREF
DB: UNIREF100
  • Identity: 39.7
  • Coverage: 754.0
  • Bit_score: 496
  • Evalue 4.10e-137
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35695.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 39.7
  • Coverage: 750.0
  • Bit_score: 504
  • Evalue 2.10e-139
histidine kinase similarity KEGG
DB: KEGG
  • Identity: 38.8
  • Coverage: 748.0
  • Bit_score: 491
  • Evalue 2.90e-136

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2862
ATGAATTCATTCAGCATTGATAAGTTCGCCGGCTTGCCACGTTGGGGGATTATCGCATTCATTTCCCGCTGTGCGCTGCGGTGCTTGCCATTATACACAGCCGAGAAAGGAGAGCCTGCCGAACAGCGATTGGCTGCAACCCAAGCAATTCGCCTTGCTGAAGAACGCGCAAAAATTGGTGGTGAATTTGAATTTTGTGATGCAATTCAATTGGACAACCAATTTATTGATAATTACGACATCGATTCTTTACGTTCAACCGTATCGGGGTCTGTCAATGCAGCTTCAAATACCCACTCTGACCTACAAGACGATAAAGAAGTAAAGATTTACACCGGGCGTGTGCTTGCGGTTACCTCTCTTGCTAGGTTAGCTCTTGACGCGGCATTCGGTAATGGTTCCGGTTCGCATTCCCCAAACCTTCCGCATCTGGCTGAAACAGCCTGCGAATGGGCTATCTTTGCCGACGCAACAATCGAGAGGGACATTTTACGTGACCTTGAAACACTCAGTAAACGCGCAGCCGCCGATAGGTGGACCGATGAAACCTCGGTTCCACCCTCAACCTTTGGTGACCTCTGGCCCGAAGGCCGCCCTCCAGGATGGCCACCACTACAGCTCTCTTTCCGTCCTCGAGCGCGAATCATTCGCACGATAGGAGATCGCCTTATCAGTGGCCCCGAAGCGGCTGTCATCGAGTTAATCAAGAACAGTCACGACGCGGATGCTTCTTATGTCAGAGTCACATTCTGCCCACCACTTGCACAGGAATCAGGTTTTATTCTTGTGGAGGATGATGGGCATGGAATGACATTGGAAGATATTCAACTGAAATGGATGGAACCAGCCACCAGTGACAAGAGTGCTCGCATTTTCAGCCCCGCTGGTCGTCGCTTGCTTGGGTCGAAGGGTATTGGTCGCTTTGCCGCGTCTCGTTTGGGGAGTCACTTGGAGTTGATTACATCCGCTGCTCTACGGTCTCCGGAAAACGATGCATCTGCAATTGCCAGCGAAGTTGCACCAGTTGTCCAGACTACCCGCATTCCGCTATTGGATTGGAACATATTTGATGACGCCAAATATTTGGAAGACATATCGTTTCCCGTGCAGTCTATGCCTCCGGCTTCACATGCTGGGACGAAATTGAAGATAACATCATTGCGTGACGAATGGTCAGAAACACGCCTAAAGAAACTTTATTCAGAACTTCGCAGATTGATTTCACCAATCCCAAACTCAGACAAGGCACCATTCAAAATATTTTTGGACCTTTCGTTATGCACACTCGAGTCCTGTGGTTTTGATGGAGTAAAAATCATGAAGGAGGTTGGGGCCGACATGCAGGATCCAAATCAAGTTGATTACGAGGAGGGAGAGGTTAGGCCATTTCCAATACTTAGCGCATGCGATTACACGGTTGAGGGAGCCTTTGACGAAGCCGGTGCTTTCGATGGGACGATGTCAATTGGCCGGGCAGGATTGGAACCGGAAAAAATCAAACTATCTGTTCCACTACCAAAAAACGGAGGAATGGAAGGATGCGGCATTGTCTTGGTCCGCCTAAATATTTTTGATCGGGAAGCAGATGCTGTGCGTAGAGTCGCGCAAAAAGCCGGGTTTGGGGATATTGGTGTTCGTGAAGCGCGAAAACTTCTTGATAATACCTGTGGCGTATCAATCTACCGCGAGGGGTTTCGGATTCGTCCTTATGGTGACGGTGAGAACGATTGGCTTACGCTCGATGCCAAGCGCGTGCAAAATCCCACTATCAAAATTGGCCGCAATCAGATCGCCGGCATCATCACGGTTGACGATGAGAAATCGTCCAATTTAATTGAACGTAGTAGTCGTGAGGGGTTGGAGGAAAACGGAAGTTTCCTTCGCCTTCAGTCTCTAATTTCACAACTTCTTTCCGAAGTTGTTGAGCCAAGGCGTCGTCAATTCCGTATCGGTGCCGGAATTGAAGTGCGCCAAGAATTACGATTCCAAGACGTTTACCGCAGGGTTCAGATGGATTGGTCCAAACTTCTTTTGGCGAAGATGCCAGAAACCGAAAGGGCGGAGGCGGAGGCTTTGATTAGTCGGGAGTCAGATCGGCTTACTTCATACCTTAAGCGCTTGGAAGAGCGTCAGGCGCAGTTGGAGGCTCAGGTTACACTCGGTTTGATCATTGGTGAAGTTATGCACCAAGGGAATACACCCCTTTCATTTCTTGAGACGGAAACTGCTCGCTTGGAACGTTGGTGGCCCCACCTGTTTGACCAGACGCCGCAGGGAGAGGAAAAGCGCGTTGAAGCGCCTCGTATTCTAAATGGCATGACTTCTAGCAACCAAAAACTTCGGGTTCTGTTTAATGCCCTGAGCCCTCTTTCAGGAGCGAGCCGAGGTAAACCAATTGCATTCGATGCAGAGGCGGTAATCGACCAAACACAATACCTCTTCGAGACAAGAATGGAAAAATTCGGAATTTCTTTTCACCTTTCTACGGACAAATCCGGGCGTATGGCTTTTGGGTATCCCGATGACCTTGCGACAGCACTGACAAATATTTTTGACAATGCTATCTACTGGCTTGCGCACCACAATATTTTGAATCCTGTCATCGCCGTGTCAATTTCTACGGAGACAGATCGCAGTATAATTAGGATTTCCGATAATGGTCAGGGGGTGCCCACAAAATTTGCTGACCAAGTCTTTGATGTCGGGTTTACGCTTAAGCCACATGGAACGGGACTCGGAATGAGTATAGCCCGAGAAGCGATAGCCCGAAGCAGCGGTGAAATTGAGTTACTTGCCTCGTCGGTTGGAGCAGTTTTTCAGATTTCATTGCCCAGCGAACCCCCTGTCTCAGCACAATCATAA
PROTEIN sequence
Length: 954
MNSFSIDKFAGLPRWGIIAFISRCALRCLPLYTAEKGEPAEQRLAATQAIRLAEERAKIGGEFEFCDAIQLDNQFIDNYDIDSLRSTVSGSVNAASNTHSDLQDDKEVKIYTGRVLAVTSLARLALDAAFGNGSGSHSPNLPHLAETACEWAIFADATIERDILRDLETLSKRAAADRWTDETSVPPSTFGDLWPEGRPPGWPPLQLSFRPRARIIRTIGDRLISGPEAAVIELIKNSHDADASYVRVTFCPPLAQESGFILVEDDGHGMTLEDIQLKWMEPATSDKSARIFSPAGRRLLGSKGIGRFAASRLGSHLELITSAALRSPENDASAIASEVAPVVQTTRIPLLDWNIFDDAKYLEDISFPVQSMPPASHAGTKLKITSLRDEWSETRLKKLYSELRRLISPIPNSDKAPFKIFLDLSLCTLESCGFDGVKIMKEVGADMQDPNQVDYEEGEVRPFPILSACDYTVEGAFDEAGAFDGTMSIGRAGLEPEKIKLSVPLPKNGGMEGCGIVLVRLNIFDREADAVRRVAQKAGFGDIGVREARKLLDNTCGVSIYREGFRIRPYGDGENDWLTLDAKRVQNPTIKIGRNQIAGIITVDDEKSSNLIERSSREGLEENGSFLRLQSLISQLLSEVVEPRRRQFRIGAGIEVRQELRFQDVYRRVQMDWSKLLLAKMPETERAEAEALISRESDRLTSYLKRLEERQAQLEAQVTLGLIIGEVMHQGNTPLSFLETETARLERWWPHLFDQTPQGEEKRVEAPRILNGMTSSNQKLRVLFNALSPLSGASRGKPIAFDAEAVIDQTQYLFETRMEKFGISFHLSTDKSGRMAFGYPDDLATALTNIFDNAIYWLAHHNILNPVIAVSISTETDRSIIRISDNGQGVPTKFADQVFDVGFTLKPHGTGLGMSIAREAIARSSGEIELLASSVGAVFQISLPSEPPVSAQS*