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berkeley_reactor_200306_planktonic_scaffold_44244

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Displaying items 211-236 of 236 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_44244_208
RBG_19FT_COMBO_Aminicenantes_65_30_curated, Aminicenantes, Bacteria

Not on your lists

comp(282262..283587)
DNA (1326bp) protein (442aa)
hypothetical protein n=1 Tax=Balneola vulgaris RepID=UPI000371F1F5
peptidase family S41 family protein
Tax=RBG_19FT_COMBO_Aminicenantes_65_30_curated
berkeley_reactor_200306_planktonic_scaffold_44244_209
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

283666..284499
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Flavobacterium sp. WG21 RepID=UPI00034774CE
Transcriptional regulator, AraC family protein {ECO:0000313|EMBL:AHM62725.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
AraC family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_44244_210
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

284773..285624
DNA (852bp) protein (284aa)
Uncharacterized protein (Fragment) n=1 Tax=Pedobacter sp. BAL39 RepID=A6E6E0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ETZ20474.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
berkeley_reactor_200306_planktonic_scaffold_44244_211
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(285715..286482)
DNA (768bp) protein (256aa)
LytTR family two component transcriptional regulator n=1 Tax=Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 RepID=R9CKR3_ELIME
Uncharacterized protein {ECO:0000313|EMBL:ETZ20473.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
LytTR family two component transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_44244_212
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(286479..287549)
DNA (1071bp) protein (357aa)
Histidine kinase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VV32_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ETZ20472.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
signal transduction histidine kinase LytS
berkeley_reactor_200306_planktonic_scaffold_44244_213
unknown

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287920..288867
DNA (948bp) protein (316aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_214
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(288901..289818)
DNA (918bp) protein (306aa)
Transcriptional regulator, AraC family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFG4_NIAKG
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AEV98395.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_44244_215
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(289873..290715)
DNA (843bp) protein (281aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFG5_NIAKG
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AEV98396.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_44244_216
Flavobacterium hibernum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(290860..291303)
DNA (444bp) protein (148aa)
Hypothetical lipoprotein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FEI1_FLAJ1
hypothetical protein
Strain DSM 12611 Contig12, whole genome shotgun sequence {ECO:0000313|EMBL:KIO52001.1}; TaxID=37752 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
berkeley_reactor_200306_planktonic_scaffold_44244_217
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(291429..292046)
DNA (618bp) protein (206aa)
Putative transcriptional regulator n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PM24_CHIPD
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:ACU62238.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_44244_218
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

292345..293787
DNA (1443bp) protein (481aa)
Major facilitator superfamily MFS_1 n=2 Tax=Myroides RepID=H1ZDF6_MYROD
MFS transporter {ECO:0000313|EMBL:KGO11423.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
MFS transporter
berkeley_reactor_200306_planktonic_scaffold_44244_219
unknown

Not on your lists

comp(293949..294575)
DNA (627bp) protein (209aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_220
unknown

Not on your lists

comp(294613..294729)
DNA (117bp) protein (39aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_221
unknown

Not on your lists

comp(295346..295702)
DNA (357bp) protein (119aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_222
unknown

Not on your lists

comp(295788..296423)
DNA (636bp) protein (212aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_223
unknown

Not on your lists

comp(296437..296556)
DNA (120bp) protein (40aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_224
unknown

Not on your lists

comp(296556..296825)
DNA (270bp) protein (90aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_225
unknown

Not on your lists

comp(297062..297676)
DNA (615bp) protein (205aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_226
unknown

Not on your lists

comp(297855..298292)
DNA (438bp) protein (146aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_227
unknown

Not on your lists

comp(298564..299181)
DNA (618bp) protein (206aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_228
unknown

Not on your lists

comp(299241..299618)
DNA (378bp) protein (126aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_229
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(299671..300447)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Prevotella melaninogenica D18 RepID=D3I5Q8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AHM59085.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_44244_230
Myroides odoratus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(301252..301710)
DNA (459bp) protein (153aa)
Uncharacterized protein n=2 Tax=Myroides RepID=K1HP99_9FLAO
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ41253.1}; TaxID=929704 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides odoratus DSM 2801.;"
berkeley_reactor_200306_planktonic_scaffold_44244_231
Schleiferia thermophila, Schleiferia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(301758..302486)
DNA (729bp) protein (243aa)
RHS repeat-associated core domain-containing protein n=1 Tax=Treponema denticola H-22 RepID=M2BJG2_TREDN
Uncharacterized protein {ECO:0000313|EMBL:KFD39100.1}; TaxID=1453500 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Schleiferiaceae; Schleiferia.;" source="Schleiferia thermophila str. Yellowstone.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_44244_232
unknown

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comp(302637..303158)
DNA (522bp) protein (174aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_233
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(303171..304523)
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PFH5_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU61680.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Displaying items 211-236 of 236 in total

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