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berkeley_reactor_200306_planktonic_scaffold_44244

Search features with annotation key words

Displaying items 91-120 of 236 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_44244_90
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(87544..89259)
DNA (1716bp) protein (572aa)
TPR repeat-containing protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PMI7_CHIPD
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:ACU58531.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_44244_91
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

89337..90383
DNA (1047bp) protein (349aa)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:AEV97259.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AEV97259.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TE68_NIAKG
3-oxoacyl-(acyl-carrier-protein) reductase
berkeley_reactor_200306_planktonic_scaffold_44244_92
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

90401..91315
DNA (915bp) protein (305aa)
Transcriptional regulator, AraC family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TE69_NIAKG
Contig127, whole genome shotgun sequence {ECO:0000313|EMBL:KIO74884.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
AraC family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_44244_93
unknown

Not on your lists

comp(91384..91674)
DNA (291bp) protein (97aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_94
unknown

Not on your lists

91935..92174
DNA (240bp) protein (80aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_95
unknown

Not on your lists

comp(92243..92983)
DNA (741bp) protein (247aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_96
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

Not on your lists

93249..93785
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Polaribacter franzmannii RepID=UPI00035C1936
acetyltransferase, ribosomal protein N-acetylase
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
berkeley_reactor_200306_planktonic_scaffold_44244_97
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

94420..94818
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W2A2_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU58080.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_44244_98
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

94881..95930
DNA (1050bp) protein (350aa)
Alpha/beta hydrolase fold protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PHR6_CHIPD
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:AEV97804.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_44244_99
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(96758..97519)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI0003746151
Uncharacterized protein {ECO:0000313|EMBL:ETZ24120.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
LytTR family two component transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_44244_100
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(97500..98519)
DNA (1020bp) protein (340aa)
Putative regulator of cell autolysis n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CP65_9FLAO
Putative regulator of cell autolysis {ECO:0000313|EMBL:EJL75441.1}; Flags: Precursor;; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
signal transduction histidine kinase LytS
berkeley_reactor_200306_planktonic_scaffold_44244_101
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(98540..98992)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00037C87A3
Uncharacterized protein {ECO:0000313|EMBL:KGO88636.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
berkeley_reactor_200306_planktonic_scaffold_44244_102
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(99060..100004)
DNA (945bp) protein (315aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VRL5_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT92718.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
berkeley_reactor_200306_planktonic_scaffold_44244_103
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(100194..100652)
DNA (459bp) protein (153aa)
Peroxiredoxin n=1 Tax=Ralstonia sp. AU12-08 RepID=S9RZW1_9RALS
Organic hydroperoxide resistance protein {ECO:0000313|EMBL:GAE65636.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
OsmC-like protein
berkeley_reactor_200306_planktonic_scaffold_44244_104
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(100691..101476)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TH71_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01681.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_44244_105
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(101500..102276)
DNA (777bp) protein (259aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YE44_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ETZ24121.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_44244_106
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(102475..104748)
DNA (2274bp) protein (758aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS05099.1}; Flags: Fragment;; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
FG-GAP repeat protein id=4817743 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_44244_107
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(104911..106329)
DNA (1419bp) protein (473aa)
Efflux transporter, outer membrane factor lipoprotein, NodT family n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FXW4_9SPHI
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:KGE13328.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
NodT family RND efflux system outer membrane lipoprotein
berkeley_reactor_200306_planktonic_scaffold_44244_108
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(106326..109472)
DNA (3147bp) protein (1049aa)
Putative ATP synthase F0, A subunit n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VP40_9SPHI
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family {ECO:0000313|EMBL:KGE13327.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
multidrug transporter AcrB
berkeley_reactor_200306_planktonic_scaffold_44244_109
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(109511..110644)
DNA (1134bp) protein (378aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VP39_9SPHI
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:KGE13326.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
RND family efflux transporter MFP subunit
berkeley_reactor_200306_planktonic_scaffold_44244_110
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

110892..112055
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2J4S6_9SPHI
Signal transduction histidine kinase, LytS {ECO:0000313|EMBL:KGE13323.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
putative two-component system sensor protein histidine kinase
berkeley_reactor_200306_planktonic_scaffold_44244_111
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

112052..112807
DNA (756bp) protein (252aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W291_DYAFD
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:KGE13324.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
LytTR family two component transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_44244_112
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

112859..113476
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9B1_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV98079.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_44244_113
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

113749..114750
DNA (1002bp) protein (334aa)
aldo/keto reductase n=1 Tax=Flavobacterium rivuli RepID=UPI000372A6D4
Aldo/keto reductase {ECO:0000313|EMBL:KGO88196.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
aldo/keto reductase
berkeley_reactor_200306_planktonic_scaffold_44244_114
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

114802..115716
DNA (915bp) protein (305aa)
Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PNK1_CHIPD
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACU64101.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_44244_115
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(115779..116879)
DNA (1101bp) protein (367aa)
Monooxygenase FAD-binding protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C2Q2_SPHS2
FAD-binding protein
Monooxygenase FAD-binding protein {ECO:0000313|EMBL:ADZ80731.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
berkeley_reactor_200306_planktonic_scaffold_44244_116
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(116960..117832)
DNA (873bp) protein (291aa)
Transcriptional regulator, AraC family n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C2Q3_SPHS2
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ADZ80732.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
berkeley_reactor_200306_planktonic_scaffold_44244_117
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

117992..118537
DNA (546bp) protein (182aa)
Uncharacterized protein {ECO:0000313|EMBL:EZH74141.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
berkeley_reactor_200306_planktonic_scaffold_44244_118
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(118791..119849)
DNA (1059bp) protein (353aa)
PKD domain containing protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRA1_CHIPD
PKD domain-containing protein
PKD domain containing protein {ECO:0000313|EMBL:ACU64340.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_44244_119
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(119881..122763)
DNA (2883bp) protein (961aa)
Cell surface glycoprotein (S-layer protein) related protein id=4846275 bin=GWA2_Ignavibacteria-rel_35_8 species=Flavobacterium sp. CF136 genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
TonB-dependent receptor {ECO:0000313|EMBL:GAL85373.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
beta-propeller repeat-containing protein
Displaying items 91-120 of 236 in total

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