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berkeley_reactor_200306_planktonic_scaffold_44244

Search features with annotation key words

Displaying items 61-90 of 236 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_44244_60
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(60496..61137)
DNA (642bp) protein (214aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IAW9_FLUTR
NmrA-like family protein {ECO:0000313|EMBL:CEJ71762.1}; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
NAD-dependent epimerase/dehydratase
berkeley_reactor_200306_planktonic_scaffold_44244_61
Elizabethkingia sp. BM10, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(61345..62103)
DNA (759bp) protein (253aa)
fabG_6; 3-oxoacyl-(acyl-carrier-protein) reductase FabG (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase FabG {ECO:0000313|EMBL:AJW65271.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AJW65271.1};; TaxID=722877 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia sp. BM10.;"
Short-chain dehydrogenase n=1 Tax=Elizabethkingia meningoseptica 502 RepID=T0PPZ4_ELIME
berkeley_reactor_200306_planktonic_scaffold_44244_62
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62225..62791)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KVY7_SOLCM
Uncharacterized protein {ECO:0000313|EMBL:KFE64388.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_44244_63
Flavobacterium sp. MEB061, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(63008..63469)
DNA (462bp) protein (154aa)
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S962_PEDSD
Contig_75, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ14605.1}; TaxID=1587524 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. MEB061.;"
Activator of Hsp90 ATPase 1 family protein
berkeley_reactor_200306_planktonic_scaffold_44244_64
Acaryochloris marina, Acaryochloris, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(63466..64128)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Acaryochloris marina (strain MBIC 11017) RepID=B0C042_ACAM1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW28389.1}; TaxID=329726 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Acaryochloris.;" source="Acaryochloris marina (strain MBIC 11017).;"
berkeley_reactor_200306_planktonic_scaffold_44244_65
Joostella marina, Joostella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(64308..64895)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Joostella marina DSM 19592 RepID=I3C8U7_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EIJ40040.1}; TaxID=926559 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Joostella.;" source="Joostella marina DSM 19592.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_44244_66
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(64949..65338)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NN07_9SPHI
DoxX-like family protein {ECO:0000313|EMBL:KIA93428.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_44244_67
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(65344..65811)
DNA (468bp) protein (156aa)
ATPase {ECO:0000313|EMBL:KIC95422.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
Activator of Hsp90 ATPase 1 family protein id=3870732 bin=GWF2_Melioribacter_38_21 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
ATPase
berkeley_reactor_200306_planktonic_scaffold_44244_68
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(65851..66189)
DNA (339bp) protein (113aa)
Transcriptional regulator, ArsR family id=4334647 bin=GWF2_Bacteroidetes_42_66 species=Chitinophaga pinensis genus=Chitinophaga taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_42_66 organism_group=Bacteroidetes organism_desc=a73
ArsR family transcriptional regulator
Tax=GWE2_Bacteroidetes_42_39_curated
berkeley_reactor_200306_planktonic_scaffold_44244_69
unknown

Not on your lists

comp(66431..66667)
DNA (237bp) protein (79aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_70
Lottia gigantea, Lottia, Gastropoda, Mollusca, Metazoa

Not on your lists

67163..68092
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Lottia gigantea RepID=V4B7Q8_LOTGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESP03646.1}; TaxID=225164 species="Eukaryota; Metazoa; Lophotrochozoa; Mollusca; Gastropoda; Patellogastropoda; Lottioidea; Lottiidae; Lottia.;" source="Lottia gigantea (Giant owl limpet).;"
berkeley_reactor_200306_planktonic_scaffold_44244_71
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(68309..68953)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THY4_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV98579.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_44244_72
unknown

Not on your lists

comp(69197..69430)
DNA (234bp) protein (78aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_73
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

69881..71260
DNA (1380bp) protein (460aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PLE1_CHIPD
Fis family transcriptional regulator
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ACU58485.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_44244_74
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(71287..72609)
DNA (1323bp) protein (441aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PLE3_CHIPD
multi-sensor signal transduction histidine kinase
Multi-sensor signal transduction histidine kinase {ECO:0000313|EMBL:ACU58487.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_44244_75
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(72762..73214)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CCA6_SPHS2
Aldehyde dehydrogenase {ECO:0000313|EMBL:KEQ29279.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_44244_76
unknown

Not on your lists

73243..73461
DNA (219bp) protein (73aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_77
unknown

Not on your lists

comp(73542..73769)
DNA (228bp) protein (76aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_78
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(73955..74824)
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003792BA4
DNA repair protein
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_44244_79
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(74850..77639)
DNA (2790bp) protein (930aa)
ATP-dependent DNA ligase n=1 Tax=Dyadobacter beijingensis RepID=UPI000379B38C
DNA ligase D {ECO:0000313|EMBL:ACT91634.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
DNA ligase D
berkeley_reactor_200306_planktonic_scaffold_44244_80
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

78180..78779
DNA (600bp) protein (200aa)
Outer membrane protein-like protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CBR8_SPHS2
hypothetical protein
Outer membrane protein-like protein {ECO:0000313|EMBL:ADZ78660.1}; Flags: Precursor;; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
berkeley_reactor_200306_planktonic_scaffold_44244_81
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

79032..79805
DNA (774bp) protein (258aa)
Ion channel protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036C99FA
mechanosensitive ion channel protein MscS
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:ACT92546.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
berkeley_reactor_200306_planktonic_scaffold_44244_82
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

79844..80344
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003760DCC
CinA domain-containing protein
CinA domain protein {ECO:0000313|EMBL:ACU03934.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
berkeley_reactor_200306_planktonic_scaffold_44244_83
unknown

Not on your lists

80356..80541
DNA (186bp) protein (62aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_84
unknown

Not on your lists

80607..80822
DNA (216bp) protein (72aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_44244_85
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

80968..81483
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2HC11_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ERJ59286.1}; TaxID=1346330 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium paucimobilis HER1398.;"
inorganic pyrophosphatase
berkeley_reactor_200306_planktonic_scaffold_44244_86
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

81480..81983
DNA (504bp) protein (168aa)
Putative membrane protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KQK7_SOLCM
Uncharacterized protein {ECO:0000313|EMBL:KIC95407.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_44244_87
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(82096..83184)
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6ECW0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EDM36528.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
3-phytase
berkeley_reactor_200306_planktonic_scaffold_44244_88
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(83258..84523)
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00035C48C8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH55138.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
berkeley_reactor_200306_planktonic_scaffold_44244_89
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(84561..87329)
DNA (2769bp) protein (923aa)
TonB-dependent receptor plug n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GML1_9BACT
TonB-dependent receptor plug {ECO:0000313|EMBL:CCH55139.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
TonB-dependent receptor
Displaying items 61-90 of 236 in total

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