ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_176984

Search features with annotation key words

Displaying items 391-420 of 463 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_176984_390
unknown

Not on your lists

comp(445594..445737)
DNA (144bp) protein (48aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_391
unknown

Not on your lists

445739..445969
DNA (231bp) protein (77aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_392
unknown

Not on your lists

446214..446324
DNA (111bp) protein (37aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_393
unknown

Not on your lists

446327..446581
DNA (255bp) protein (85aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_394
unknown

Not on your lists

446729..447229
DNA (501bp) protein (167aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_395
unknown

Not on your lists

447239..447571
DNA (333bp) protein (111aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_396
unknown

Not on your lists

447582..447968
DNA (387bp) protein (129aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_397
Streptomyces collinus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

448007..448501
DNA (495bp) protein (165aa)
mucin n=1 Tax=Streptomyces sp. R1-NS-10 RepID=UPI00035CE909
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGS72860.1}; TaxID=1214242 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces collinus Tu 365.;"
berkeley_reactor_200306_planktonic_scaffold_176984_398
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

448532..448822
DNA (291bp) protein (97aa)
ribonuclease inhibitor-like protein n=1 Tax=Paenibacillus larvae RepID=UPI00016939B0
Uncharacterized protein {ECO:0000313|EMBL:ESL83245.1}; TaxID=1329856 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae UCICRE 12.;"
barnase inhibitor
berkeley_reactor_200306_planktonic_scaffold_176984_399
unknown

Not on your lists

448927..449343
DNA (417bp) protein (139aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_400
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

449382..449660
DNA (279bp) protein (93aa)
Uncharacterized protein {ECO:0000313|EMBL:KEA05910.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
berkeley_reactor_200306_planktonic_scaffold_176984_401
unknown

Not on your lists

449752..450114
DNA (363bp) protein (121aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_402
Serratia plymuthica, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(450187..450483)
DNA (297bp) protein (99aa)
Uncharacterized protein n=2 Tax=Serratia plymuthica RepID=S4YVD4_SERPL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIJ18004.1}; TaxID=1154756 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia plymuthica PRI-2C.;"
berkeley_reactor_200306_planktonic_scaffold_176984_403
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(450655..451041)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PBS6_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU63140.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_404
unknown

Not on your lists

comp(451260..451523)
DNA (264bp) protein (88aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_405
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

451711..454023
DNA (2313bp) protein (771aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TA50_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02422.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_176984_406
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(454164..454457)
DNA (294bp) protein (98aa)
Histone family protein DNA-binding protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PK45_CHIPD
histone family protein DNA-binding protein
Histone family protein DNA-binding protein {ECO:0000313|EMBL:ACU58386.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_407
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

454705..458070
DNA (3366bp) protein (1122aa)
SNF2-related protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ED59_RUNSL
SNF2-like protein
SNF2-related protein {ECO:0000313|EMBL:AEI46707.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
berkeley_reactor_200306_planktonic_scaffold_176984_408
unknown

Not on your lists

comp(458237..458767)
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029A823B
berkeley_reactor_200306_planktonic_scaffold_176984_409
Capnocytophaga sputigena, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(458997..459218)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=E2N3T6_CAPSP
Uncharacterized protein {ECO:0000313|EMBL:EEB65486.1}; TaxID=553177 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga sputigena ATCC 33612.;"
cell division protein
berkeley_reactor_200306_planktonic_scaffold_176984_410
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

459484..461517
DNA (2034bp) protein (678aa)
Histidine kinase n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C681_SPHS2
histidine kinase
Histidine kinase {ECO:0000313|EMBL:ADZ81043.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
berkeley_reactor_200306_planktonic_scaffold_176984_411
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

461514..462137
DNA (624bp) protein (208aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PGE6_CHIPD
LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ACU59878.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_412
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(462172..463650)
DNA (1479bp) protein (493aa)
hypothetical protein n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B45DF4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV99164.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_176984_413
unknown

Not on your lists

comp(463704..464003)
DNA (300bp) protein (100aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_414
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

464382..465266
DNA (885bp) protein (295aa)
Phosphoesterase PA-phosphatase related protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QHX6_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKD55903.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
berkeley_reactor_200306_planktonic_scaffold_176984_415
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(465270..466262)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBH0_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW03470.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_176984_416
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

466400..466978
DNA (579bp) protein (193aa)
Putative transcriptional regulator, Crp/Fnr family n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VYE8_DYAFD
putative Crp/Fnr family transcriptional regulator
Putative transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ACT91627.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
berkeley_reactor_200306_planktonic_scaffold_176984_417
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

467064..467942
DNA (879bp) protein (293aa)
yhhW_2; Quercetin 2,3-dioxygenase (EC:1.13.11.24)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI000376B6E9
Pirin {ECO:0000313|EMBL:KGO79050.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
berkeley_reactor_200306_planktonic_scaffold_176984_418
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

467961..468284
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00036C8FFD
Uncharacterized protein {ECO:0000313|EMBL:KGO85247.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
response regulator receiver protein
berkeley_reactor_200306_planktonic_scaffold_176984_419
Flavobacterium hibernum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

468351..469289
DNA (939bp) protein (313aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Flavobacterium sp. F52 RepID=J0S392_9FLAO
Strain DSM 12611 Contig13, whole genome shotgun sequence {ECO:0000313|EMBL:KIO51816.1}; TaxID=37752 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
glyoxalase/bleomycin resistance protein/dioxygenase
Displaying items 391-420 of 463 in total

View Taxonomy