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berkeley_reactor_200306_planktonic_scaffold_176984

Search features with annotation key words

Displaying items 331-360 of 463 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_176984_331
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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367317..368423
DNA (1107bp) protein (369aa)
Response regulator receiver sensor signal transduction histidine kinase n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GJ86_9BACT
Response regulator receiver sensor signal transduction histidine kinase {ECO:0000313|EMBL:CCH53961.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
response regulator receiver sensor signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_176984_332
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

368433..369635
DNA (1203bp) protein (401aa)
Response regulator receiver sensor signal transduction histidine kinase n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SCN9_PEDSD
Hydrogenase transcriptional regulatory protein hupR1 {ECO:0000313|EMBL:KHJ39313.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
response regulator receiver sensor signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_176984_333
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(369767..370609)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Bacteroides stercoris CC31F RepID=S3ZI24_BACSE
Cupin domain protein {ECO:0000313|EMBL:EXZ93492.1}; TaxID=1339269 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. Korea 419.;"
transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_176984_334
Myroides odoratimimus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

370640..372196
DNA (1557bp) protein (519aa)
Major facilitator superfamily MFS_1 n=2 Tax=Myroides RepID=H1ZEK9_MYROD
Drug:H+ antiporter-2 (14 Spanner) (DHA2) family drug resistance MFS transporter {ECO:0000313|EMBL:EKB06097.1}; TaxID=883155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides [odoratimimus] CIP 103059.;"
MULTISPECIES: MFS transporter
berkeley_reactor_200306_planktonic_scaffold_176984_335
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(372316..374181)
DNA (1866bp) protein (622aa)
Amidohydrolase family protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VQQ1_9SPHI
Amidohydrolase family protein {ECO:0000313|EMBL:EFK56102.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
amidohydrolase
berkeley_reactor_200306_planktonic_scaffold_176984_336
unknown

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374818..375006
DNA (189bp) protein (63aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_337
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

375176..375757
DNA (582bp) protein (194aa)
Transcriptional regulator, TetR family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PNK0_CHIPD
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ACU64100.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_338
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

375913..376704
DNA (792bp) protein (264aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PNJ9_CHIPD
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACU64099.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_339
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

377159..377602
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JJE0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ELR68353.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
GNAT family acetyltransferase
berkeley_reactor_200306_planktonic_scaffold_176984_340
BJP_IG2102_Bacteroidetes_40_9, Bacteroidetes, Bacteria

Not on your lists

377606..378736
DNA (1131bp) protein (377aa)
amino acid racemase n=1 Tax=Anaerophaga thermohalophila RepID=UPI000237BAE6
amino acid racemase
Tax=BJP_IG2102_Bacteroidetes_40_9
berkeley_reactor_200306_planktonic_scaffold_176984_341
unknown

Not on your lists

378742..379152
DNA (411bp) protein (137aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_342
Indibacter alkaliphilus, Indibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

379294..380577
DNA (1284bp) protein (428aa)
Small-conductance mechanosensitive channel n=1 Tax=Indibacter alkaliphilus LW1 RepID=S2DTH1_9BACT
Small-conductance mechanosensitive channel {ECO:0000313|EMBL:EOZ95391.1}; TaxID=1189612 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae.;" source="Indibacter alkaliphilus LW1.;"
small-conductance mechanosensitive channel
berkeley_reactor_200306_planktonic_scaffold_176984_343
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(381075..383102)
DNA (2028bp) protein (676aa)
Peptidase C13 family n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L1N3_METHD
Peptidase C13 family
Peptidase C13 family {ECO:0000313|EMBL:AGB50825.1}; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans.;" source="Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 /; DMS1).;"
berkeley_reactor_200306_planktonic_scaffold_176984_344
Alloprevotella tannerae, Alloprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(383153..383512)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LF87_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEX72406.1}; TaxID=626522 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Alloprevotella.;" source="Prevotella tannerae ATCC 51259.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_345
unknown

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comp(384273..384833)
DNA (561bp) protein (187aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_346
unknown

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comp(385348..385551)
DNA (204bp) protein (68aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_347
unknown

Not on your lists

385705..385833
DNA (129bp) protein (43aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_348
unknown

Not on your lists

385965..386156
DNA (192bp) protein (64aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_349
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

386244..387245
DNA (1002bp) protein (334aa)
Sensor protein lytS n=1 Tax=Fibrella aestuarina BUZ 2 RepID=I0K5D1_9BACT
Sensor protein lytS
Sensor protein lytS {ECO:0000313|EMBL:CCG99334.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
berkeley_reactor_200306_planktonic_scaffold_176984_350
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

387248..387955
DNA (708bp) protein (236aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FBY1_FLAJ1
Chemotaxis protein CheY {ECO:0000313|EMBL:KFC21383.1}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
LytTR family two component transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_176984_351
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(388022..389104)
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PNZ5_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU58692.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_352
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

389390..389971
DNA (582bp) protein (194aa)
Alkyl hydroperoxide reductase n=1 Tax=Galbibacter marinus RepID=K2PVM3_9FLAO
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:CDS93183.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
alkyl hydroperoxide reductase
berkeley_reactor_200306_planktonic_scaffold_176984_353
Vibrio nigripulchritudo, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(390261..391316)
DNA (1056bp) protein (352aa)
gamma-aminobutyric-acid receptor subunit beta n=1 Tax=Vibrio gazogenes RepID=UPI0003945E37
Cys-loop ligand-gated ionic channel {ECO:0000313|EMBL:CCN42663.1}; TaxID=1238441 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio nigripulchritudo FTn2.;"
Cys-loop ligand-gated ionic channel
berkeley_reactor_200306_planktonic_scaffold_176984_354
unknown

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comp(391332..392513)
DNA (1182bp) protein (394aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_355
unknown

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comp(392732..393802)
DNA (1071bp) protein (357aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_356
unknown

Not on your lists

comp(394066..394317)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2KN17_9GAMM
berkeley_reactor_200306_planktonic_scaffold_176984_357
Prosthecochloris aestuarii, Prosthecochloris, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(394416..394898)
DNA (483bp) protein (161aa)
Jacalin-related lectin n=1 Tax=Prosthecochloris aestuarii (strain DSM 271 / SK 413) RepID=B4S683_PROA2
Jacalin-related lectin {ECO:0000313|EMBL:ACF47185.1}; Flags: Precursor;; TaxID=290512 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Prosthecochloris.;" source="Prosthecochloris aestuarii (strain DSM 271 / SK 413).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_358
unknown

Not on your lists

comp(394976..395479)
DNA (504bp) protein (168aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_359
Kordia algicida, Kordia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(395551..396657)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Kordia algicida OT-1 RepID=A9EA74_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EDP94752.1}; TaxID=391587 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Kordia.;" source="Kordia algicida OT-1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_360
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(396685..397299)
DNA (615bp) protein (205aa)
Putative chitinase n=1 Tax=Pseudoalteromonas luteoviolacea 2ta16 RepID=V4HKH0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ETX02826.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
glycoside hydrolase family 19
Displaying items 331-360 of 463 in total

View Taxonomy