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berkeley_reactor_200306_planktonic_scaffold_176984_353

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: comp(390261..391316)

Top 3 Functional Annotations

Value Algorithm Source
gamma-aminobutyric-acid receptor subunit beta n=1 Tax=Vibrio gazogenes RepID=UPI0003945E37 similarity UNIREF
DB: UNIREF100
  • Identity: 40.1
  • Coverage: 282.0
  • Bit_score: 215
  • Evalue 5.20e-53
Cys-loop ligand-gated ionic channel {ECO:0000313|EMBL:CCN42663.1}; TaxID=1238441 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio nigripulchritudo FTn2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 38.8
  • Coverage: 268.0
  • Bit_score: 211
  • Evalue 1.80e-51
Cys-loop ligand-gated ionic channel similarity KEGG
DB: KEGG
  • Identity: 38.8
  • Coverage: 268.0
  • Bit_score: 210
  • Evalue 4.70e-52

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Taxonomy

Vibrio nigripulchritudo → Vibrio → Vibrionales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1056
ATGCAGTTGGTCGGACCTTTCAAATCTACTTATATGTCTTGTCTAAAGAAAATAGGGATGCTCCTGCTGTGTTGTTGCGCAGGAGTCTGCTCCCTGCAAGCAAAGTCAACATGGGCTAAAGTAAAACAGCCGATAAAAGTTACCGTCAAGCTGCATATCCTGAAGATCTATGATATCAATACCGTGACGCAGACCTTTTCCCTGGATGGGTTCCTGACGCTGATGTGGAAGGCGCCCGATGAAGAAAAGCCTTATAAGCCGCTATTCCTGGTCGATAACCAGGAAGTAAGCGAAGCCTTCCGGGATAAGCTTTGGTGGCCCAATATCGACTTTATTAATATCGAAGGCGAGCGGCATATTCCCTACCGTAGGGTGGTTATGGACAGCCAGGGCTATGTAACCTATACTGAACGGTTTTACGCGACCATGGGTTGTAAAATGGATTTTAAAAAATTTCCTTTCGACAACCAGCTTTTACTCCTGCAACTCGAATCCTTTGGGTTTAGCGATACCGTTATGGTTTTTGATCGCCAGCAAAAAGACGCGCTGAATACGGATGATATTACCATCGTAGAATGGGATATTACCGGTTCTAAAACCTATGTCAACGAATATCTTTATAAGACCCATTTGCGGAAGGGCGCGGGTTTTAACCGTTTCAATATAGAAATTGAAGTACACCGGAATCCCGGGTTTTATATCTGGGAGTTCTTTTTACCCTTAACGCTTTTGATCCTGCTGAGCTGGTTCGTGTTCTGGATTGCCAATCCCGAAGTGCAGATATCGCTGGCCTTTACCCTGATGCTTACCTTAGTGGCTTATAGCTTCTACAGCTCTTCTTACCTGCCCCGCCTGCCTTACAATACCTTTATTCAATCTACCGTAATTGCGGGTTATATCGTCATTTTCGTATTGATTGCCGCTATCGTCGTTAAATACGTACTACTCGCCGGCAAGCGGAAAAGAGCCGCAGCCCGGCTGGACAATATCATGAAATGGGGCATACCGGTATTAACCCTCTCTGTACTGGGCTGGCTCTGGCAGTATTTCTTTTAG
PROTEIN sequence
Length: 352
MQLVGPFKSTYMSCLKKIGMLLLCCCAGVCSLQAKSTWAKVKQPIKVTVKLHILKIYDINTVTQTFSLDGFLTLMWKAPDEEKPYKPLFLVDNQEVSEAFRDKLWWPNIDFINIEGERHIPYRRVVMDSQGYVTYTERFYATMGCKMDFKKFPFDNQLLLLQLESFGFSDTVMVFDRQQKDALNTDDITIVEWDITGSKTYVNEYLYKTHLRKGAGFNRFNIEIEVHRNPGFYIWEFFLPLTLLILLSWFVFWIANPEVQISLAFTLMLTLVAYSFYSSSYLPRLPYNTFIQSTVIAGYIVIFVLIAAIVVKYVLLAGKRKRAAARLDNIMKWGIPVLTLSVLGWLWQYFF*