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berkeley_reactor_200306_planktonic_scaffold_176984

Search features with annotation key words

Displaying items 301-330 of 463 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_176984_301
Chryseobacterium soli, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

329453..330019
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000379355D
Uncharacterized protein {ECO:0000313|EMBL:KFF10139.1}; TaxID=445961 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium soli.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_302
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(330095..330412)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2IXR5_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ERJ57489.1}; TaxID=1346330 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium paucimobilis HER1398.;"
multidrug resistance protein
berkeley_reactor_200306_planktonic_scaffold_176984_303
Indibacter alkaliphilus, Indibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(330668..330901)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Indibacter alkaliphilus LW1 RepID=S2DE36_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EOZ97169.1}; TaxID=1189612 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae.;" source="Indibacter alkaliphilus LW1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_304
unknown

Not on your lists

331052..331507
DNA (456bp) protein (152aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_305
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

331941..335144
DNA (3204bp) protein (1068aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PC44_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:ACU57672.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_306
Cesiribacter andamanensis, Cesiribacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

335265..335534
DNA (270bp) protein (90aa)
Putative transcriptional regulator n=1 Tax=Cesiribacter andamanensis AMV16 RepID=M7N688_9BACT
Putative transcriptional regulator {ECO:0000313|EMBL:EMR04148.1}; TaxID=1279009 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Cesiribacter.;" source="Cesiribacter andamanensis AMV16.;"
berkeley_reactor_200306_planktonic_scaffold_176984_307
Elizabethkingia anophelis, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(335594..336127)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Elizabethkingia meningoseptica 502 RepID=T0NT73_ELIME
Uncharacterized protein {ECO:0000313|EMBL:CDN76577.1}; TaxID=1117645 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia anophelis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_308
Elizabethkingia anophelis, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(336139..336954)
DNA (816bp) protein (272aa)
Putative HTH-type transcriptional regulator in mcrB 3'region n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GG99_9BACT
Putative HTH-type transcriptional regulator in mcrB 3'region {ECO:0000313|EMBL:CDN76576.1}; TaxID=1117645 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia anophelis.;"
AraC family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_176984_309
Pontibacter sp. BAB1700, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(337063..338472)
DNA (1410bp) protein (470aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI00037B086B
Uncharacterized protein {ECO:0000313|EMBL:EJF10955.1}; TaxID=1144253 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_310
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(338553..339083)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0P801_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ERJ57663.1}; TaxID=1346330 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium paucimobilis HER1398.;"
N-acetyltransferase GCN5
berkeley_reactor_200306_planktonic_scaffold_176984_311
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(339287..340480)
DNA (1194bp) protein (398aa)
Monooxygenase, FAD-binding n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FG19_FLAJ1
FAD-binding monooxygenase
Monooxygenase, FAD-binding {ECO:0000313|EMBL:ABQ05848.1}; TaxID=376686 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;"
berkeley_reactor_200306_planktonic_scaffold_176984_312
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

340558..341517
DNA (960bp) protein (320aa)
Transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6E6W2_9SPHI
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AKD54223.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
berkeley_reactor_200306_planktonic_scaffold_176984_313
unknown

Not on your lists

341844..342260
DNA (417bp) protein (139aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_314
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

342282..342926
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQY1_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU62534.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_315
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

343061..343744
DNA (684bp) protein (228aa)
PhoB family transcriptional regulator n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0NWQ2_9SPHI
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AIM36443.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
berkeley_reactor_200306_planktonic_scaffold_176984_316
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

343741..345108
DNA (1368bp) protein (456aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
Two-component system sensor histidine kinase n=1 Tax=Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) RepID=H8XUZ7_FLAIG
histidine kinase
berkeley_reactor_200306_planktonic_scaffold_176984_317
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

345228..345932
DNA (705bp) protein (235aa)
MgtC/SapB transporter n=3 Tax=Elizabethkingia RepID=H0KXK0_9FLAO
Magnesium transporter MgtC {ECO:0000313|EMBL:KFF17501.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
Mg(2+) transport ATPase protein C
berkeley_reactor_200306_planktonic_scaffold_176984_318
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

346020..348725
DNA (2706bp) protein (902aa)
mgtB; Magnesium-transporting ATPase, P-type 1 (EC:3.6.3.2)
Magnesium-transporting ATPase n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2J4R7_9SPHI
Magnesium ABC transporter ATPase {ECO:0000313|EMBL:KFF17500.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
berkeley_reactor_200306_planktonic_scaffold_176984_319
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

348877..350010
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MY47_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIM36441.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
berkeley_reactor_200306_planktonic_scaffold_176984_320
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

350035..353136
DNA (3102bp) protein (1034aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G3R3_9SPHI
membrane protein
Membrane protein {ECO:0000313|EMBL:AIM36440.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
berkeley_reactor_200306_planktonic_scaffold_176984_321
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

353147..354445
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2IXS0_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIM36439.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
berkeley_reactor_200306_planktonic_scaffold_176984_322
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

354456..355208
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2J4B8_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KFF17496.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
Outer membrane protein beta-barrel domain
berkeley_reactor_200306_planktonic_scaffold_176984_323
Chryseobacterium antarcticum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(355217..355942)
DNA (726bp) protein (242aa)
ATPase, AAA family n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VRE5_9SPHI
ATPase {ECO:0000313|EMBL:KEY17748.1}; TaxID=266748 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium antarcticum.;"
ATPase central domain protein
berkeley_reactor_200306_planktonic_scaffold_176984_324
unknown

Not on your lists

356637..357128
DNA (492bp) protein (164aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_325
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(357153..359408)
DNA (2256bp) protein (752aa)
Coagulation factor 5/8 type domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) PF15_CHIPD">RepID=C7PF15_CHIPD
coagulation factor 5/8 type domain-containing protein
Coagulation factor 5/8 type domain protein {ECO:0000313|EMBL:ACU59742.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_326
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(359415..362297)
DNA (2883bp) protein (961aa)
TPR repeat-containing protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) PF16_CHIPD">RepID=C7PF16_CHIPD
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:ACU59743.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_327
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(362333..363835)
DNA (1503bp) protein (501aa)
Glycosyl transferase family 2 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) PF17_CHIPD">RepID=C7PF17_CHIPD
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACU59744.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_328
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(363865..365301)
DNA (1437bp) protein (479aa)
Glycosyl transferase family 2 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) PF18_CHIPD">RepID=C7PF18_CHIPD
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACU59745.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_329
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(365301..366467)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) PF19_CHIPD">RepID=C7PF19_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU59746.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_330
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(366460..366840)
DNA (381bp) protein (127aa)
Response regulator receiver protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) PF20_CHIPD">RepID=C7PF20_CHIPD
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ACU59747.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Displaying items 301-330 of 463 in total

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