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berkeley_reactor_200306_planktonic_scaffold_176984

Search features with annotation key words

Displaying items 271-300 of 463 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_176984_271
unknown

Not on your lists

295231..295668
DNA (438bp) protein (146aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_272
unknown

Not on your lists

comp(295739..295954)
DNA (216bp) protein (72aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_273
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

296486..297094
DNA (609bp) protein (203aa)
Transcriptional regulator, TetR family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PBA7_CHIPD
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ACU61245.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_274
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

297158..297985
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PBA8_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU61246.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_275
unknown

Not on your lists

298343..298609
DNA (267bp) protein (89aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_276
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

298720..299817
DNA (1098bp) protein (366aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Niabella soli DSM 19437 RepID=H1NMY4_9SPHI
secretion protein HylD
Secretion protein HylD {ECO:0000313|EMBL:AHF15421.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_176984_277
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

299884..303018
DNA (3135bp) protein (1045aa)
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family n=1 Tax=Niabella soli DSM 19437 RepID=H1NMY3_9SPHI
multidrug transporter AcrB
Multidrug transporter AcrB {ECO:0000313|EMBL:AHF15422.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_176984_278
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

303030..304493
DNA (1464bp) protein (488aa)
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Niabella soli DSM 19437 RepID=H1NMY2_9SPHI
RND transporter
RND transporter {ECO:0000313|EMBL:AHF15423.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_176984_279
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

304649..305419
DNA (771bp) protein (257aa)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:AEV96932.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AEV96932.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7Z4_NIAKG
3-oxoacyl-(acyl-carrier-protein) reductase
berkeley_reactor_200306_planktonic_scaffold_176984_280
Aeromonas veronii, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

305455..306057
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Aeromonas veronii AMC35 RepID=K1J7N7_9GAMM
short chain dehydrogenase/reductase family oxidoreductase
Uncharacterized protein {ECO:0000313|EMBL:EKB23937.1}; TaxID=1073385 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas veronii AMC35.;"
berkeley_reactor_200306_planktonic_scaffold_176984_281
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

306136..307038
DNA (903bp) protein (301aa)
Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PH38_CHIPD
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACU63589.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_282
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(307738..308409)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. F52 RepID=J1KW42_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJG02443.1}; TaxID=1202532 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. F52.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_283
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(308676..311921)
DNA (3246bp) protein (1082aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
DNA polymerase n=1 Tax=Niabella aurantiaca RepID=UPI000360E73C
DNA polymerase
berkeley_reactor_200306_planktonic_scaffold_176984_284
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(311934..313430)
DNA (1497bp) protein (499aa)
DNA repair nucleotidyltransferase/DNA polymerase n=1 Tax=Niabella soli DSM 19437 RepID=H1NLX0_9SPHI
nucleotidyltransferase
Nucleotidyltransferase {ECO:0000313|EMBL:AHF14746.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_176984_285
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(313433..314167)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NLX1_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF14745.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_176984_286
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

314234..315043
DNA (810bp) protein (270aa)
Transcriptional regulator, XRE family n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VZT3_DYAFD
DNA-binding protein {ECO:0000313|EMBL:KEQ29044.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
XRE family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_176984_287
Chryseobacterium sp. JM1, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

315044..315640
DNA (597bp) protein (199aa)
Oxidoreductase, 2OG-Fe(II) oxygenase family protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W857_9FLAO
2OG-Fe(II) oxygenase {ECO:0000313|EMBL:KFF21955.1}; TaxID=1233950 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. JM1.;"
alkB4; 2OG-Fe(II) oxygenase superfamily protein
berkeley_reactor_200306_planktonic_scaffold_176984_288
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(315750..318164)
DNA (2415bp) protein (805aa)
TonB-dependent receptor plug n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PNA8_CHIPD
TonB-dependent receptor plug {ECO:0000313|EMBL:ACU62318.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
TonB-dependent receptor plug
berkeley_reactor_200306_planktonic_scaffold_176984_289
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(318198..318794)
DNA (597bp) protein (199aa)
Metal-dependent phosphohydrolase n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BA09_ZUNPS
Uncharacterized protein {ECO:0000313|EMBL:KIC94741.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
metal-dependent phosphohydrolase
berkeley_reactor_200306_planktonic_scaffold_176984_290
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(318804..319508)
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000379C431
Phospholipid phosphatase {ECO:0000313|EMBL:KIC94621.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_291
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(319559..320611)
DNA (1053bp) protein (351aa)
Histidine kinase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PNA7_CHIPD
histidine kinase
Histidine kinase {ECO:0000313|EMBL:ACU62317.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_292
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(320599..321273)
DNA (675bp) protein (225aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PNA6_CHIPD
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ACU62316.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_293
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

321909..323312
DNA (1404bp) protein (468aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Dihydrolipoamide dehydrogenase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSS6_CHIPD
dihydrolipoamide dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_176984_294
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(323382..324206)
DNA (825bp) protein (275aa)
Helix-turn-helix, AraC domain-containing protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y332_9SPHI
Helix-turn-helix, AraC domain-containing protein {ECO:0000313|EMBL:EHQ28850.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
AraC family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_176984_295
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(324252..325223)
DNA (972bp) protein (324aa)
aldo/keto reductase n=1 Tax=Dyadobacter beijingensis RepID=UPI00037C0E52
NADP-dependent oxidoreductase domain
NADP-dependent oxidoreductase domain {ECO:0000313|EMBL:ADZ77518.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
berkeley_reactor_200306_planktonic_scaffold_176984_296
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(325330..326376)
DNA (1047bp) protein (349aa)
Aminoglycoside phosphotransferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUJ6_CHIPD
aminoglycoside phosphotransferase
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:ACU60994.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_297
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(326376..326810)
DNA (435bp) protein (145aa)
Transcriptional regulator, MarR family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUJ7_CHIPD
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ACU60995.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_298
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(326980..327888)
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036431C3
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AEV98148.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_176984_299
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(327949..328764)
DNA (816bp) protein (272aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAI7_NIAKG
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AEV98149.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_176984_300
Chryseobacterium soli, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(328894..329244)
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037A71A3
HxlR family transcriptional regulator {ECO:0000313|EMBL:KFF10141.1}; TaxID=445961 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium soli.;"
HxlR family transcriptional regulator
Displaying items 271-300 of 463 in total

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