ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_176984_292

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: comp(320599..321273)

Top 3 Functional Annotations

Value Algorithm Source
Two component transcriptional regulator, winged helix family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PNA6_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 73.7
  • Coverage: 224.0
  • Bit_score: 344
  • Evalue 4.70e-92
winged helix family two component transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 73.7
  • Coverage: 224.0
  • Bit_score: 344
  • Evalue 1.30e-92
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ACU62316.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 73.7
  • Coverage: 224.0
  • Bit_score: 344
  • Evalue 6.60e-92

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Chitinophaga pinensis → Chitinophaga → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 675
ATGAAGATCCTGATTGTTGAAGATGAACCCGCCCTGGCGGCCAGCATCGGCGCCTACCTGTCGGACGAAAACTACCGTTGCGAGTTTGCGGCCGATTATGCCACGGCGCTGGAAAAGATCGACCTGTACGCTTACGATTGTATCCTGCTGGACCTGATGCTGCCCGGCGGCAGCGGTCTGCAATTGCTGGAAGAGCTCAGGGCACAGCAGAAACAGGATGGCGTGATTATTATTTCGGCCAAAGATGCGATCGAGGATAAAGTGGCCGGTTTACAGATCGGCGCCGACGATTACCTGGCCAAGCCCTTTCATCTGCCCGAACTGGCGGCCAGGGTACATTCGCTGATCCGGCGCAAACAATTCGGTACCGCGAATATCATCGAACAACATGAACTGACGATCGACCTGCTCGCTAAAACCGTTAAGGTAGAGGACCGGGAAGTAGCCCTGACCAAAAAGGAATATGACCTCCTGCTGCTCTTCGTGAGCAACAGGAATAAAGTTATTTCGAAAAGCGCCATCGCCGAACAGTTATCCGGCGATATGGCCGATATGTTCGATAGTTATGATTTTATTTATGCGCATGTCAAAAACCTGAAGCGTAAATTGCAGGAAGCCGGTTATGGCAATTATTTAAAGACCCTGTACGGTACGGGGTATAAATGGGTAATATGA
PROTEIN sequence
Length: 225
MKILIVEDEPALAASIGAYLSDENYRCEFAADYATALEKIDLYAYDCILLDLMLPGGSGLQLLEELRAQQKQDGVIIISAKDAIEDKVAGLQIGADDYLAKPFHLPELAARVHSLIRRKQFGTANIIEQHELTIDLLAKTVKVEDREVALTKKEYDLLLLFVSNRNKVISKSAIAEQLSGDMADMFDSYDFIYAHVKNLKRKLQEAGYGNYLKTLYGTGYKWVI*