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berkeley_reactor_200306_planktonic_scaffold_176984

Search features with annotation key words

Displaying items 241-270 of 463 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_176984_241
unknown

Not on your lists

comp(266951..267091)
DNA (141bp) protein (47aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_242
unknown

Not on your lists

267134..267379
DNA (246bp) protein (82aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_243
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

267515..268561
DNA (1047bp) protein (349aa)
Signal transduction histidine kinase, LytS n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT72_CHIPD
signal transduction histidine kinase LytS
Signal transduction histidine kinase, LytS {ECO:0000313|EMBL:ACU60862.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_244
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

268558..269277
DNA (720bp) protein (240aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT73_CHIPD
LytTR family two component transcriptional regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:ACU60863.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_245
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

269376..270551
DNA (1176bp) protein (392aa)
Lanthionine synthetase C family protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT74_CHIPD
lanthionine synthetase C family protein
Lanthionine synthetase C family protein {ECO:0000313|EMBL:ACU60864.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_246
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

270669..271241
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029AF6C8
Contig181, whole genome shotgun sequence {ECO:0000313|EMBL:KIO74499.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_247
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(271301..272032)
DNA (732bp) protein (244aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FCQ3_FLAJ1
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABQ07017.1}; TaxID=376686 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;"
berkeley_reactor_200306_planktonic_scaffold_176984_248
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

272103..272507
DNA (405bp) protein (135aa)
HxlR family transcriptional regulator n=1 Tax=Dyadobacter beijingensis RepID=UPI00036305FA
HxlR family transcriptional regulator
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:ACT92268.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
berkeley_reactor_200306_planktonic_scaffold_176984_249
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(272496..273065)
DNA (570bp) protein (190aa)
Putative ATPase n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G6R5_ECHVK
ATPase
Putative ATPase {ECO:0000313|EMBL:AGA80520.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
berkeley_reactor_200306_planktonic_scaffold_176984_250
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(273046..274302)
DNA (1257bp) protein (419aa)
Putative RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C4N4_SPHS2
ECF subfamily RNA polymerase sigma-24 subunit
Putative RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADZ81028.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
berkeley_reactor_200306_planktonic_scaffold_176984_251
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(274348..274707)
DNA (360bp) protein (120aa)
hypothetical protein id=7719110 bin=BACIGN_2 species=Sphingobacterium sp. genus=Sphingobacterium taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
berkeley_reactor_200306_planktonic_scaffold_176984_252
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(274735..275199)
DNA (465bp) protein (155aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000381E067
carboxymuconolactone decarboxylase
berkeley_reactor_200306_planktonic_scaffold_176984_253
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(275330..276310)
DNA (981bp) protein (327aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KZG9_HALH1
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:AEE49439.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
berkeley_reactor_200306_planktonic_scaffold_176984_254
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(276425..276877)
DNA (453bp) protein (151aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Alkylhydroperoxidase like protein, AhpD family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBC6_NIAKG
alkylhydroperoxidase
berkeley_reactor_200306_planktonic_scaffold_176984_255
Leptospira kmetyi, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(276901..277419)
DNA (519bp) protein (173aa)
Acyl-CoA thioester hydrolase, YbgC/YbaW family n=1 Tax=Leptospira kmetyi serovar Malaysia str. Bejo-Iso9 RepID=V6HT73_9LEPT
Acyl-CoA thioester hydrolase, YbgC/YbaW family {ECO:0000313|EMBL:EQA55336.1}; TaxID=1049970 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira kmetyi serovar Malaysia str. Bejo-Iso9.;"
thioesterase superfamily protein
berkeley_reactor_200306_planktonic_scaffold_176984_256
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

277732..278616
DNA (885bp) protein (295aa)
Putative uncharacterized protein n=1 Tax=Moorea producens 3L RepID=F4XSJ0_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:KIC95522.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
berkeley_reactor_200306_planktonic_scaffold_176984_257
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(279101..279841)
DNA (741bp) protein (247aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PH41_CHIPD
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACU63592.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_258
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(279923..280507)
DNA (585bp) protein (195aa)
Putative transcriptional regulator, Crp/Fnr family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPK3_NIAKG
Crp family transcriptional regulator
Putative transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:AEV97824.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_176984_259
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(281649..281927)
DNA (279bp) protein (93aa)
Transposase n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VS04_9SPHI
Transposase {ECO:0000313|EMBL:EFK56555.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
transposase
berkeley_reactor_200306_planktonic_scaffold_176984_260
unknown

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comp(282025..282225)
DNA (201bp) protein (67aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_261
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

282607..283203
DNA (597bp) protein (199aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PHU8_CHIPD
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACU61820.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_262
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

283243..284244
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Bacteroides ovatus CL03T12C18 RepID=I8YMP4_BACOV
Uncharacterized protein {ECO:0000313|EMBL:EIY63762.1}; TaxID=997886 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus CL03T12C18.;"
anti-sigma factor
berkeley_reactor_200306_planktonic_scaffold_176984_263
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

284286..286919
DNA (2634bp) protein (878aa)
TonB-dependent receptor n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAI9_NIAKG
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AEV98151.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_176984_264
unknown

Not on your lists

comp(286909..287031)
DNA (123bp) protein (41aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_265
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(287066..287338)
DNA (273bp) protein (91aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YCX5_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ25146.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_266
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(287953..288591)
DNA (639bp) protein (213aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQW5_NIAKG
LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:AEV97864.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_176984_267
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(288623..290584)
DNA (1962bp) protein (654aa)
Signal transduction histidine kinase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KRT2_SOLCM
signal transduction histidine kinase
Signal transduction histidine kinase {ECO:0000313|EMBL:AFD07720.1}; Flags: Precursor;; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
berkeley_reactor_200306_planktonic_scaffold_176984_268
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

Not on your lists

290872..293184
DNA (2313bp) protein (771aa)
Putative uncharacterized protein id=3899708 bin=GWF2_Bacteroidetes_38_335 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
berkeley_reactor_200306_planktonic_scaffold_176984_269
BJP_08E140C01_Bacteriodales_41_10, Bacteriodales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

293212..294276
DNA (1065bp) protein (355aa)
Conserved repeat domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJJ2_NIAKG
hypothetical protein
Tax=BJP_08E140C01_Bacteriodales_41_10
berkeley_reactor_200306_planktonic_scaffold_176984_270
unknown

Not on your lists

294463..294927
DNA (465bp) protein (155aa)

This feature has no annotations

Displaying items 241-270 of 463 in total

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