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berkeley_reactor_200306_planktonic_scaffold_176984_250

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: comp(273046..274302)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C4N4_SPHS2 similarity UNIREF
DB: UNIREF100
  • Identity: 65.9
  • Coverage: 413.0
  • Bit_score: 549
  • Evalue 1.80e-153
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 65.9
  • Coverage: 413.0
  • Bit_score: 549
  • Evalue 5.10e-154
Putative RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADZ81028.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.9
  • Coverage: 413.0
  • Bit_score: 549
  • Evalue 2.50e-153

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Taxonomy

Sphingobacterium sp. 21 → Sphingobacterium → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1257
ATGAACCAACAGGAACTGCTCCCCCATTTATTCAGAACGGAATACCGCAAGATCGTCTCGGTGCTTGGGGCCAGCTTTGGTATGGCGCATATCGAAACGGCCGAGGACCTGGTAAGCGATACCTTCCTGGCGGCGGCCGAGTTATGGTCCATAAAGGGCGTGCCTGAAAACCCGGTTGCATGGCTGTATACCGTGGCCAAGAACAAAACAAAGAACCTGCTGAAAAGAGATGAATTGTTTAACCGCAAGCTAAGCCCCGAGATCCGCTATACCGCCGAACTAGCCGAAGTGCCCGAACTCGATCTCTCCGAACAGAACATCAGGGACAGCCAGCTGGCCATGATCTTTACCGTATGCGATCCCTGCATCGCTCCTGAGGCACAGGTCGCGCTGGCCCTCAACCTGCTGTGTGGTTTTGGCGTACAGGAAATAGCGGATGCCTTTCTGACCGGTAAAGACGTGATCTATAAACGGCTGAGCCGGGCCAAAGAAAAACTGAAACAGGAACAGATTGTTATCGAAAAGCCGGCGGCAAAGGCGGTAGCCGAACGTATGGCCCGGGTGCTTACCGCTATATACCTGTTGTTTAGCGAGGGCTATTACTCGATGGTAGCAGACTCGGTATTACGCAGGGAGCTGTGTGCAGAGGCCATGCGGCTTGCCTACCTGCTTACCGAAGATGCCGCTACCGATACCCCGGCGGTCAATGCCTTGCTCGCACTCATGTGTTTTCATGTATCCCGTTTCGAAGCCCGTACCGATGCACAGGGCGCTATTGTATTATATGCCGACCAGGATACCCAGCTTTGGAACCAGGAACTGGTCGATAAAGGAACCCTCTATCTTAACAGGGCCTCGCGGGGTACTGCATTGTCCCGCTACCACCTCGAGGCGGCCATTGCCTACTGGCATACGCGTAAGGAAGATACCGTCGAAAAATGGGAACAGGTGCTGCAGTTGTACAACCAGCTCCTGCAGCTCGAATACTCGCCCATAGCCGCGCTCAACCGTACCTATGCCTTGTCGAAGGCCAATGGTAAGGAAGAAGCCATTGCCGCAGCGCTGCAATTGGGACTCCGTGATAACCAGTTTTATTATTCCCTGCTCGGGCACCTGTACACGGGTGTCGATACGGCTAAAGCCATCGGTTATTACGAAGAAGCGCTGATACGGATCCATACCCCGGCGGAGCAAATACCCCTGCTGCGCAAACTGGAAGATTTAAAAAACCCTACCGATGAAACCCATAATCCATAA
PROTEIN sequence
Length: 419
MNQQELLPHLFRTEYRKIVSVLGASFGMAHIETAEDLVSDTFLAAAELWSIKGVPENPVAWLYTVAKNKTKNLLKRDELFNRKLSPEIRYTAELAEVPELDLSEQNIRDSQLAMIFTVCDPCIAPEAQVALALNLLCGFGVQEIADAFLTGKDVIYKRLSRAKEKLKQEQIVIEKPAAKAVAERMARVLTAIYLLFSEGYYSMVADSVLRRELCAEAMRLAYLLTEDAATDTPAVNALLALMCFHVSRFEARTDAQGAIVLYADQDTQLWNQELVDKGTLYLNRASRGTALSRYHLEAAIAYWHTRKEDTVEKWEQVLQLYNQLLQLEYSPIAALNRTYALSKANGKEEAIAAALQLGLRDNQFYYSLLGHLYTGVDTAKAIGYYEEALIRIHTPAEQIPLLRKLEDLKNPTDETHNP*