ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_262904

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_262904_1
unknown

Not on your lists

556..1641
DNA (1086bp) protein (362aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_262904_2
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1814..2629
DNA (816bp) protein (272aa)
Putative uncharacterized protein n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N615_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAO30830.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
berkeley_reactor_200306_planktonic_scaffold_262904_3
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2935..4194
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6ECW4_9SPHI
DNA modification/repair radical SAM protein {ECO:0000313|EMBL:ETZ23127.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
radical SAM protein
berkeley_reactor_200306_planktonic_scaffold_262904_4
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

4206..4973
DNA (768bp) protein (256aa)
DNA metabolism protein n=1 Tax=Acinetobacter calcoaceticus RepID=UPI0002F83FFC
DNA metabolism protein {ECO:0000313|EMBL:KGO91059.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_262904_5
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5129..5971
DNA (843bp) protein (281aa)
Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PFK2_CHIPD
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACU63414.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_262904_6
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6077..6829
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KNF9_SOLCM
dehydrogenase
Uncharacterized protein {ECO:0000313|EMBL:AFD07957.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
berkeley_reactor_200306_planktonic_scaffold_262904_7
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

7493..9190
DNA (1698bp) protein (566aa)
Signal transduction histidine kinase n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RZN6_LEAB4
Uncharacterized protein {ECO:0000313|EMBL:KFC20253.1}; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_262904_8
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9199..9894
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI00036AC141
Two component transcriptional regulator, lyttr family protein {ECO:0000313|EMBL:KFC20252.1}; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
two component transcriptional regulator, lyttr family
berkeley_reactor_200306_planktonic_scaffold_262904_9
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10019..10450)
DNA (432bp) protein (144aa)
Peptidase M12A, astacin {ECO:0000313|EMBL:AEE53410.1}; EC=3.4.24.21 {ECO:0000313|EMBL:AEE53410.1};; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
Peptidase M12A, astacin n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KTN6_HALH1
peptidase M12A, astacin
berkeley_reactor_200306_planktonic_scaffold_262904_10
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11302..17817
DNA (6516bp) protein (2172aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036E69E1
psrP1; cell wall surface anchor family protein
Tax=GWE2_Bacteroidetes_42_39_curated
berkeley_reactor_200306_planktonic_scaffold_262904_11
unknown

Not on your lists

18549..18797
DNA (249bp) protein (83aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_262904_trna_1
unknown

Not on your lists

comp(18676..18749)
DNA (74bp)
transferRNA Asp
berkeley_reactor_200306_planktonic_scaffold_262904_12
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18981..19361
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XVH9_PEDHD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU04045.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
berkeley_reactor_200306_planktonic_scaffold_262904_13
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19371..19925
DNA (555bp) protein (185aa)
Protein involved in beta-1 3-glucan synthesis n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PAK8_CHIPD
beta-1 3-glucan synthesis protein
Protein involved in beta-1 3-glucan synthesis {ECO:0000313|EMBL:ACU62972.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_262904_14
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20025..21098)
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GFZ6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCH52821.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_262904_15
Chryseobacterium sp. JM1, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21227..22015)
DNA (789bp) protein (263aa)
Response regulator of the LytR/AlgR family n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CHN4_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFF21699.1}; TaxID=1233950 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. JM1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_262904_16
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21996..25016)
DNA (3021bp) protein (1007aa)
Putative regulator of cell autolysis n=1 Tax=Chryseobacterium sp. CF314 RepID=J2JVC1_9FLAO
Putative regulator of cell autolysis {ECO:0000313|EMBL:EJL71825.1}; Flags: Precursor;; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
signal transduction histidine kinase LytS
berkeley_reactor_200306_planktonic_scaffold_262904_17
unknown

Not on your lists

comp(25223..26914)
DNA (1692bp) protein (564aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_262904_18
unknown

Not on your lists

comp(27134..27277)
DNA (144bp) protein (48aa)

This feature has no annotations

Displaying 19 items

View Taxonomy