ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_26155_179

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: comp(208474..209466)

Top 3 Functional Annotations

Value Algorithm Source
Anti-FecI sigma factor, FecR n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VTP3_DYAFD similarity UNIREF
DB: UNIREF100
  • Identity: 34.3
  • Coverage: 347.0
  • Bit_score: 161
  • Evalue 8.30e-37
FecR anti-FecI sigma factor similarity KEGG
DB: KEGG
  • Identity: 34.3
  • Coverage: 347.0
  • Bit_score: 161
  • Evalue 2.40e-37
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:ACT92986.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 34.3
  • Coverage: 347.0
  • Bit_score: 161
  • Evalue 1.20e-36

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Dyadobacter fermentans → Dyadobacter → Cytophagales → Cytophagia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 993
ATGGACCCCAAGCGGCTATCATATTTATTAGAACGGTACAGGCTCAACCGCTGTACCCGCGAGGAGCGGGCAGAAATTGATAGCTGGTATGCCGGTCTGGACAATCCAGACTATAAACCCATGTACCAGGAGGGAACTGCCGAAGCTAAAGAGTATGTGGCGCAGCACACCGCACGCATTATGGATGTAATAGCCCGGCGCCGTAAACGTAGAATTGTTTTAAGGCAAACCGGGATCGCCGCTACTATAGTAGGCCTGCTGGGCCTTGCGATGGTGTCCTTGTATATCTATAATAACTCTTTTTCTCACGTAAAACAGCCGCCAGCCGTAGTTCACTACGAGGTAACCAACAGCCAGGTTGCAGATAGCAGGTATTTAAACCTGCCCGACAACTCTGTAGTGATACTACACGCTGGTAGCCAATTACAGGTAGATACTAGCAGCTTTAACAAAGAAGGCAGGCATGTAACCCTTACCGGTGAGGCGTATTTTGACATTGCGCATAACCCTGCTAAACCATTTGTTATTAAGGTAAATGATCTTACCGTTACCGTACTGGGAACGGCCTTTAATATAAAGCAGGTTGGCGACAGTGTTTCCGTAACGGTTACTCGTGGCAAGGTACAGGTAGAAAAGGACAGTAAGCTGTTGGGTATGCTTACTCAAGGCCAGCAAATTGCCACCTCTAACGCAGCGCCCGTCACGCAGGTAAGAACGGCAGCGCTGGAACCGGTTACAGCCTGGATGCAGCAAGGATTGCATTTCAATAATACAACACTGGGTGATGCGGTGGCACGGCTTCGCGAACGTTATGGCGCCGACATCTTGTTAAAATCGCCCGGCTTGGAGCATTGTATCGTAAGCCTTGCAACTCCTTTGAGCGGTACCGAAAGTCTCACTGATGTTCTTGAAGTTCTCTGTACCGTATTGGGAGCAACTTATACCAGCAATCAAGGCAAAATTGAAATAACAGGACAAGCTTGTAGAGAATAA
PROTEIN sequence
Length: 331
MDPKRLSYLLERYRLNRCTREERAEIDSWYAGLDNPDYKPMYQEGTAEAKEYVAQHTARIMDVIARRRKRRIVLRQTGIAATIVGLLGLAMVSLYIYNNSFSHVKQPPAVVHYEVTNSQVADSRYLNLPDNSVVILHAGSQLQVDTSSFNKEGRHVTLTGEAYFDIAHNPAKPFVIKVNDLTVTVLGTAFNIKQVGDSVSVTVTRGKVQVEKDSKLLGMLTQGQQIATSNAAPVTQVRTAALEPVTAWMQQGLHFNNTTLGDAVARLRERYGADILLKSPGLEHCIVSLATPLSGTESLTDVLEVLCTVLGATYTSNQGKIEITGQACRE*