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berkeley_reactor_200306_planktonic_scaffold_101710_45

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: comp(47844..48173)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase, omega subunit n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRC9_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 64.5
  • Coverage: 110.0
  • Bit_score: 154
  • Evalue 3.40e-35
DNA-directed RNA polymerase subunit omega similarity KEGG
DB: KEGG
  • Identity: 64.5
  • Coverage: 110.0
  • Bit_score: 154
  • Evalue 9.50e-36
DNA-directed RNA polymerase, omega subunit {ECO:0000313|EMBL:ACU64368.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.5
  • Coverage: 110.0
  • Bit_score: 154
  • Evalue 4.70e-35

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Taxonomy

Chitinophaga pinensis → Chitinophaga → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 330
ATGAGCACAAATAAAAAAATGGTTTCTTCCCTGAACCCACTGATCGAAACCCGTGATGTAATTGCCGTTAAGAACAAGACCGGCAATATTTATGAAAGCATTGTTGTTGCTTCAAAGCGCGCCAACCAGATCAATGTCAGTATGAAAGAGGAATTGCACCGTAAACTGGACGATTTCGCCAACCATACCGATTCCCTGGAGGAAGTTCATGAAAACAAAGAGCAGATCGAGATCTCCCGCTTTTACGAGCGTATGGCGAATCCTGTACTGCAGTCGCTGAACGAATTCATGAACGATAAGATCTATTATCGTAAAAAAGACCAGGAATAA
PROTEIN sequence
Length: 110
MSTNKKMVSSLNPLIETRDVIAVKNKTGNIYESIVVASKRANQINVSMKEELHRKLDDFANHTDSLEEVHENKEQIEISRFYERMANPVLQSLNEFMNDKIYYRKKDQE*