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berkeley_reactor_200306_planktonic_scaffold_101710

Search features with annotation key words

Displaying items 31-60 of 184 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_101710_31
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

35472..35921
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000374EA83
activator of HSP90 ATPase
Activator of HSP90 ATPase {ECO:0000313|EMBL:AHF16722.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_101710_32
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

35979..36488
DNA (510bp) protein (170aa)
DinB family protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W3A3_9FLAO
Damage-inducible protein DinB {ECO:0000313|EMBL:KIA93539.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
dinB3; DNA polymerase IV
berkeley_reactor_200306_planktonic_scaffold_101710_33
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

36543..36986
DNA (444bp) protein (148aa)
Glyoxalase family protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W8G0_9FLAO
Glyoxalase family protein {ECO:0000313|EMBL:EFK33688.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
3-demethylubiquinone-9 3-methyltransferase
berkeley_reactor_200306_planktonic_scaffold_101710_34
unknown

Not on your lists

37191..37634
DNA (444bp) protein (148aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_35
unknown

Not on your lists

37722..38162
DNA (441bp) protein (147aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_36
unknown

Not on your lists

38335..38766
DNA (432bp) protein (144aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_37
unknown

Not on your lists

39420..39863
DNA (444bp) protein (148aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_38
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(40015..41592)
DNA (1578bp) protein (526aa)
Na+/H+ antiporter n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FW39_9SPHI
Contig31, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77609.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
nhaP; sodium/hydrogen antiporter
berkeley_reactor_200306_planktonic_scaffold_101710_39
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

41836..43137
DNA (1302bp) protein (434aa)
yxeP; putative hydrolase YxeP (EC:3.-.-.-)
Amidohydrolase n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y930_9SPHI
Contig5, whole genome shotgun sequence {ECO:0000313|EMBL:KIO78889.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
berkeley_reactor_200306_planktonic_scaffold_101710_40
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

43327..44106
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DDZ2_SINAD
Uncharacterized protein {ECO:0000313|EMBL:KIA96235.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_101710_trna_2
unknown

Not on your lists

comp(44357..44428)
DNA (72bp)
transferRNA Arg
berkeley_reactor_200306_planktonic_scaffold_101710_41
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(44459..45055)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNT3_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:GAO41834.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_101710_42
unknown

Not on your lists

comp(45052..45459)
DNA (408bp) protein (136aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_43
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(45614..46528)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TB01_NIAKG
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
berkeley_reactor_200306_planktonic_scaffold_101710_44
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(46521..47741)
DNA (1221bp) protein (407aa)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase {ECO:0000313|EMBL:AEW01349.1}; EC=6.3.2.5 {ECO:0000313|EMBL:AEW01349.1};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TB02_NIAKG
phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase
berkeley_reactor_200306_planktonic_scaffold_101710_45
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(47844..48173)
DNA (330bp) protein (110aa)
DNA-directed RNA polymerase, omega subunit n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRC9_CHIPD
DNA-directed RNA polymerase subunit omega
DNA-directed RNA polymerase, omega subunit {ECO:0000313|EMBL:ACU64368.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_101710_46
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(48160..49158)
DNA (999bp) protein (333aa)
Outer membrane assembly lipoprotein YfiO n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRD0_CHIPD
outer membrane assembly lipoprotein YfiO
Outer membrane assembly lipoprotein YfiO {ECO:0000313|EMBL:ACU64369.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_101710_trna_1
unknown

Not on your lists

comp(49126..49210)
DNA (85bp)
transferRNA Leu
berkeley_reactor_200306_planktonic_scaffold_101710_47
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(49368..51542)
DNA (2175bp) protein (725aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QC13_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB39748.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
berkeley_reactor_200306_planktonic_scaffold_101710_48
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(51855..53993)
DNA (2139bp) protein (713aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QC13_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB39748.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
berkeley_reactor_200306_planktonic_scaffold_101710_49
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

55817..57520
DNA (1704bp) protein (568aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2JF41_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KEQ30319.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
putative ubiquinone biosynthesis protein
berkeley_reactor_200306_planktonic_scaffold_101710_50
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(57574..57933)
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003741C9F
3-hydroxyacyl-ACP dehydratase
3-hydroxyacyl-ACP dehydratase {ECO:0000313|EMBL:AHF15897.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_101710_51
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(57920..58600)
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036A4C27
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF17740.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_101710_52
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(58578..59234)
DNA (657bp) protein (219aa)
Outer membrane lipoprotein carrier protein LolA n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PAZ3_CHIPD
outer membrane lipoprotein carrier protein LolA
Outer membrane lipoprotein carrier protein LolA {ECO:0000313|EMBL:ACU59365.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_101710_53
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(59293..60366)
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EF73_9SPHI
Contig86, whole genome shotgun sequence {ECO:0000313|EMBL:KIO75725.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
radical SAM protein
berkeley_reactor_200306_planktonic_scaffold_101710_54
unknown

Not on your lists

comp(60452..60781)
DNA (330bp) protein (110aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_55
unknown

Not on your lists

comp(60815..61150)
DNA (336bp) protein (112aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_56
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(61190..62719)
DNA (1530bp) protein (510aa)
NAD-dependent aldehyde dehydrogenase (EC:1.2.1.3)
Uncharacterized protein n=3 Tax=Myroides odoratimimus RepID=H1GJJ9_9FLAO
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
berkeley_reactor_200306_planktonic_scaffold_101710_57
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(62871..65018)
DNA (2148bp) protein (716aa)
dipeptidyl-peptidase IV (EC:3.4.14.5)
peptidase S9 n=1 Tax=Empedobacter brevis RepID=UPI000362E491
Putative dipeptidyl-peptidase {ECO:0000313|EMBL:GAE65923.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
berkeley_reactor_200306_planktonic_scaffold_101710_58
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

65162..66226
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000381D154
DNA protecting protein DprA
DNA protecting protein DprA {ECO:0000313|EMBL:ADZ79075.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
Displaying items 31-60 of 184 in total

View Taxonomy