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berkeley_reactor_200306_planktonic_scaffold_101710

Search features with annotation key words

Displaying items 151-180 of 184 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_101710_149
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

170066..170914
DNA (849bp) protein (283aa)
putative carboxymethylenebutenolidase (EC:3.1.1.45)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI0003807F27
Dienelactone hydrolase {ECO:0000313|EMBL:KGO80887.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
berkeley_reactor_200306_planktonic_scaffold_101710_150
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

171021..171968
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B3543F
Uncharacterized protein {ECO:0000313|EMBL:KIA91104.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_101710_151
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(171987..172358)
DNA (372bp) protein (124aa)
Helix-turn-helix protein n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FY92_ECHVK
Helix-turn-helix protein
Helix-turn-helix protein {ECO:0000313|EMBL:AGA78889.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
berkeley_reactor_200306_planktonic_scaffold_101710_152
unknown

Not on your lists

172743..173057
DNA (315bp) protein (105aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_153
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(173137..173601)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI00030E300B
Two-component response regulator {ECO:0000313|EMBL:KGE12863.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
response regulator receiver protein
berkeley_reactor_200306_planktonic_scaffold_101710_154
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(173740..175875)
DNA (2136bp) protein (712aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI00036CB238
multi-sensor signal transduction multi-kinase
berkeley_reactor_200306_planktonic_scaffold_101710_155
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(175882..176697)
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI000307722F
Uncharacterized protein {ECO:0000313|EMBL:KGE12860.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
putative PadR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_101710_156
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(176684..177406)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VTG5_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EFK57066.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_101710_157
Elizabethkingia meningoseptica, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

178068..179018
DNA (951bp) protein (317aa)
ErfK/YbiS/YcfS/YnhG family protein n=2 Tax=Elizabethkingia meningoseptica RepID=R9CJH9_ELIME
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:EOR29477.1}; TaxID=1216967 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_101710_158
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

179106..181175
DNA (2070bp) protein (690aa)
Double-transmembrane region domain protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L6F4_HALH1
double-transmembrane region domain-containing protein
Double-transmembrane region domain protein {ECO:0000313|EMBL:AEE48836.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
berkeley_reactor_200306_planktonic_scaffold_101710_159
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(181190..181582)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NK49_9SPHI
membrane protein
Membrane protein {ECO:0000313|EMBL:KIC93264.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
berkeley_reactor_200306_planktonic_scaffold_101710_160
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(181594..182109)
DNA (516bp) protein (172aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase id=3991090 bin=GWF2_Bacteroidetes_38_335 species=Pedobacter heparinus genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
berkeley_reactor_200306_planktonic_scaffold_101710_161
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(182138..182959)
DNA (822bp) protein (274aa)
Alpha/beta hydrolase fold protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PMJ3_CHIPD
alpha/beta hydrolase
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ACU58537.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_101710_162
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(183032..184282)
DNA (1251bp) protein (417aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Signal peptidase I n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PJT0_CHIPD
signal peptidase I
berkeley_reactor_200306_planktonic_scaffold_101710_163
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(184443..186155)
DNA (1713bp) protein (571aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PJY1_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU58322.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_101710_164
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(186308..186718)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PVA7_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU64700.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_101710_165
Paraprevotella clara CAG:116, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(186846..187610)
DNA (765bp) protein (255aa)
Triosephosphate isomerase {ECO:0000256|RuleBase:RU000517}; EC=5.3.1.1 {ECO:0000256|RuleBase:RU000517};; TaxID=1263095 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella; environmental samples.;" source="Paraprevotella clara CAG:116.;"
tpiA; triose-phosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Paraprevotella clara CAG:116 RepID=R5NAE4_9BACT
berkeley_reactor_200306_planktonic_scaffold_101710_166
Flavobacteriales bacterium ALC-1, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(187634..188899)
DNA (1266bp) protein (422aa)
Adenylosuccinate lyase {ECO:0000313|EMBL:EDP70218.1}; EC=4.3.2.2 {ECO:0000313|EMBL:EDP70218.1};; TaxID=391603 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium ALC-1.;"
Adenylosuccinate lyase n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UP29_9FLAO
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
berkeley_reactor_200306_planktonic_scaffold_101710_167
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

188969..189547
DNA (579bp) protein (193aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Peptide deformylase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PB28_CHIPD
peptide deformylase
berkeley_reactor_200306_planktonic_scaffold_101710_168
unknown

Not on your lists

189590..189958
DNA (369bp) protein (123aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_169
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

190112..190879
DNA (768bp) protein (256aa)
MazG family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T911_NIAKG
MazG family protein
Pyrophosphatase {ECO:0000313|EMBL:KIC91336.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
berkeley_reactor_200306_planktonic_scaffold_101710_170
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

190849..194682
DNA (3834bp) protein (1278aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Histidine kinase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PIE3_CHIPD
histidine kinase
berkeley_reactor_200306_planktonic_scaffold_101710_171
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

195025..200064
DNA (5040bp) protein (1680aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. CF136 RepID=J3BXT1_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJL60281.1}; Flags: Precursor;; TaxID=1144313 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_101710_172
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

200112..202454
DNA (2343bp) protein (781aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI000373DA65
Surface antigen (D15) {ECO:0000313|EMBL:KIA83985.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
surface antigen (D15)
berkeley_reactor_200306_planktonic_scaffold_101710_173
unknown

Not on your lists

comp(202616..203191)
DNA (576bp) protein (192aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_174
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

203400..204557
DNA (1158bp) protein (386aa)
Fmu (Sun) domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQ01_CHIPD
Fmu (Sun) domain-containing protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
berkeley_reactor_200306_planktonic_scaffold_101710_175
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(204561..206237)
DNA (1677bp) protein (559aa)
Peptidase families S8 and S53 domain protein id=3715618 bin=GWF2_Bacteroidetes_49_14 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
peptidase S8 and S53 subtilisin kexin sedolisin
Tax=GWF2_Bacteroidetes_49_14_curated
berkeley_reactor_200306_planktonic_scaffold_101710_176
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(206304..206672)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PPE0_CHIPD
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
berkeley_reactor_200306_planktonic_scaffold_101710_177
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(206703..207557)
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003710F7A
Uncharacterized protein {ECO:0000313|EMBL:GAO43907.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_101710_178
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

207646..208569
DNA (924bp) protein (308aa)
beta-aspartyl-peptidase (EC:3.4.19.5)
asparaginase n=1 Tax=Pontibacter roseus RepID=UPI00035E7A26
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
Displaying items 151-180 of 184 in total

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