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berkeley_reactor_200306_planktonic_scaffold_101710

Search features with annotation key words

Displaying items 91-120 of 184 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_101710_89
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(101466..102539)
DNA (1074bp) protein (358aa)
2-nitropropane dioxygenase NPD n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PJL9_CHIPD
2-nitropropane dioxygenase
2-nitropropane dioxygenase NPD {ECO:0000313|EMBL:ACU63779.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_101710_90
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(102629..103342)
DNA (714bp) protein (238aa)
UBA/THIF-type NAD/FAD binding protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IHL1_FLUTR
Thiamine biosynthesis protein ThiF {ECO:0000313|EMBL:KGO80257.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
UBA/THIF-type NAD/FAD-binding protein
berkeley_reactor_200306_planktonic_scaffold_101710_91
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(103349..104470)
DNA (1122bp) protein (374aa)
thiamine biosynthesis protein ThiH n=1 Tax=Spirosoma spitsbergense RepID=UPI00037E4BC9
thiazole biosynthesis protein ThiH
Thiazole biosynthesis protein ThiH {ECO:0000313|EMBL:ADB42532.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
berkeley_reactor_200306_planktonic_scaffold_101710_92
Flavobacterium psychrophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(104481..105248)
DNA (768bp) protein (256aa)
Thiazole synthase {ECO:0000255|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000255|HAMAP-Rule:MF_00443};; TaxID=402612 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511).;"
Thiazole synthase n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=THIG_FLAPJ
thiazole synthase
berkeley_reactor_200306_planktonic_scaffold_101710_93
GWB2_Bacteroidetes_41_8_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(105223..105870)
DNA (648bp) protein (216aa)
Thiamine-phosphate synthase n=1 Tax=Flavobacterium sp. F52 RepID=J1KR67_9FLAO
thiamine-phosphate synthase
Tax=GWB2_Bacteroidetes_41_8_curated
berkeley_reactor_200306_planktonic_scaffold_101710_94
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(105860..106609)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Flavobacterium sp. ACAM 123 RepID=UPI0003135BD4
phosphomethylpyrimidine kinase
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:AKD04256.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
berkeley_reactor_200306_planktonic_scaffold_101710_95
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(106582..107199)
DNA (618bp) protein (206aa)
Thiamine-phosphate diphosphorylase n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6GWR7_FLAPJ
Uncharacterized protein {ECO:0000313|EMBL:KIC92082.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
thiamine monophosphate synthase
berkeley_reactor_200306_planktonic_scaffold_101710_96
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(107200..109047)
DNA (1848bp) protein (616aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
Phosphomethylpyrimidine synthase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IH02_FLUTR
hydroxymethylpyrimidine synthase
berkeley_reactor_200306_planktonic_scaffold_101710_97
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(109052..109255)
DNA (204bp) protein (68aa)
Thiamine biosynthesis protein ThiS n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IH01_FLUTR
Uncharacterized protein {ECO:0000313|EMBL:KJS06152.1}; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
thiamine biosynthesis protein ThiS
berkeley_reactor_200306_planktonic_scaffold_101710_98
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(109479..111605)
DNA (2127bp) protein (709aa)
DNA topoisomerase III n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KRJ2_SOLCM
DNA topoisomerase III {ECO:0000313|EMBL:AFD07517.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
DNA topoisomerase III
berkeley_reactor_200306_planktonic_scaffold_101710_99
unknown

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111839..112033
DNA (195bp) protein (65aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_100
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(112288..114084)
DNA (1797bp) protein (599aa)
ABC transporter ATP-binding protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003793D59
ABC transporter
ABC transporter related {ECO:0000313|EMBL:ACT92310.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
berkeley_reactor_200306_planktonic_scaffold_101710_101
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(114250..117255)
DNA (3006bp) protein (1002aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KXK5_HALH1
Uncharacterized protein {ECO:0000313|EMBL:AEE50376.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_101710_102
Flavobacterium suncheonense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

117563..117976
DNA (414bp) protein (138aa)
Peroxiredoxin, OsmC subfamily n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GG59_9BACT
Peroxiredoxin {ECO:0000313|EMBL:KGO89989.1}; TaxID=1121899 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium suncheonense GH29-5 = DSM 17707.;"
OsmC subfamily peroxiredoxin
berkeley_reactor_200306_planktonic_scaffold_101710_103
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(118039..118836)
DNA (798bp) protein (266aa)
Ig family protein id=3853275 bin=GWF2_Bacteroidetes_38_335 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
hypothetical protein
Tax=GWF2_Bacteroidetes_38_335_curated
berkeley_reactor_200306_planktonic_scaffold_101710_104
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(118885..119232)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PPZ9_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:ETZ21231.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_101710_105
Chryseobacterium sp. StRB126, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(119238..119699)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4AJM8_FLELS
araC; AraC family transcriptional regulator
AraC family transcriptional regulator {ECO:0000313|EMBL:BAP32196.1}; TaxID=878220 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. StRB126.;"
berkeley_reactor_200306_planktonic_scaffold_101710_106
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

comp(119850..120671)
DNA (822bp) protein (274aa)
Tax=BJP_IG2103_Bacteroidetes_41_9
berkeley_reactor_200306_planktonic_scaffold_101710_107
unknown

Not on your lists

comp(121104..121571)
DNA (468bp) protein (156aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_108
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(121820..122854)
DNA (1035bp) protein (345aa)
LD-carboxypeptidase n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VNW2_9SPHI
Putative LD-carboxypeptidase {ECO:0000313|EMBL:GAE63369.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
microcin C7 resistance protein MccF
berkeley_reactor_200306_planktonic_scaffold_101710_109
unknown

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comp(123254..123514)
DNA (261bp) protein (87aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_110
unknown

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comp(123677..124399)
DNA (723bp) protein (241aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_111
unknown

Not on your lists

comp(124413..124781)
DNA (369bp) protein (123aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_112
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(125322..125693)
DNA (372bp) protein (124aa)
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VG08_CAUST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG10011.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
berkeley_reactor_200306_planktonic_scaffold_101710_113
unknown

Not on your lists

127086..127322
DNA (237bp) protein (79aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_114
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

127457..128572
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VJ42_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KHJ37205.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_101710_115

Not on your lists

129337..130185
DNA (849bp) protein (283aa)
Short chain dehydrogenase n=1 Tax=uncultured organism RepID=T1WB70_9ZZZZ
Short chain dehydrogenase {ECO:0000313|EMBL:AGU11764.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_planktonic_scaffold_101710_116
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

130285..130575
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036984BE
Variovorax paradoxus strain MEDvA23 contig_18, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33983.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_101710_117
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

130597..131502
DNA (906bp) protein (302aa)
Transcriptional regulator, AraC family n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KTJ9_HALH1
Transcriptional regulator {ECO:0000313|EMBL:KEQ30648.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
AraC family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_101710_118
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

132848..137158
DNA (4311bp) protein (1437aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SCU3_PEDSD
RND-type efflux pump membrane protein {ECO:0000313|EMBL:GAO44523.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
CzcA family heavy metal efflux pump
Displaying items 91-120 of 184 in total

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