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berkeley_reactor_200306_planktonic_scaffold_101710

Search features with annotation key words

Displaying items 121-150 of 184 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_101710_119
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

137170..138423
DNA (1254bp) protein (418aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VVX2_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:GAE64133.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
czcB_2; Cobalt-zinc-cadmium resistance protein CzcB
berkeley_reactor_200306_planktonic_scaffold_101710_120
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

138553..140583
DNA (2031bp) protein (677aa)
heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase (EC:3.6.3.5 3.6.3.3)
Heavy metal translocating P-type ATPase n=1 Tax=Myroides odoratimimus CCUG 3837 RepID=K1HMC2_9FLAO
Metal ABC transporter ATPase {ECO:0000313|EMBL:KIA91678.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
berkeley_reactor_200306_planktonic_scaffold_101710_121
unknown

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140878..141225
DNA (348bp) protein (116aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_122
unknown

Not on your lists

141604..142041
DNA (438bp) protein (146aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_123
unknown

Not on your lists

142130..142570
DNA (441bp) protein (147aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_124
unknown

Not on your lists

142680..143138
DNA (459bp) protein (153aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_125
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(143299..144063)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037AF4D7
Uncharacterized protein {ECO:0000313|EMBL:KIA94607.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_101710_126
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(144070..146691)
DNA (2622bp) protein (874aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037D5968
Uncharacterized protein {ECO:0000313|EMBL:KIC93825.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
TonB-dependent receptor
berkeley_reactor_200306_planktonic_scaffold_101710_127
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(147083..148495)
DNA (1413bp) protein (471aa)
Transcriptional regulator, GntR family n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VR43_9SPHI
Transcriptional regulator {ECO:0000313|EMBL:KIA91577.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_101710_128
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

148588..149517
DNA (930bp) protein (310aa)
Transporter n=1 Tax=Pseudomonas sp. CMAA1215 RepID=U6ZN87_9PSED
Contig34, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77418.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
transporter
berkeley_reactor_200306_planktonic_scaffold_101710_129
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

149536..150141
DNA (606bp) protein (202aa)
FMN-binding negative transcriptional regulator n=1 Tax=Galbibacter marinus RepID=K2PNF2_9FLAO
Contig34, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77419.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
FMN-binding negative transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_101710_130
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(150147..152051)
DNA (1905bp) protein (635aa)
AAA ATPase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PGH0_CHIPD
ATPase AAA
AAA ATPase {ECO:0000313|EMBL:ACU59902.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_101710_131
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

152094..152696
DNA (603bp) protein (201aa)
Lipoprotein Spr n=1 Tax=Bacteroides massiliensis dnLKV3 RepID=R9I0C4_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KIC90151.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
NLP/P60 protein
berkeley_reactor_200306_planktonic_scaffold_101710_132
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

152738..153841
DNA (1104bp) protein (368aa)
HEAT domain containing protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PPU4_CHIPD
HEAT domain-containing protein
HEAT domain containing protein {ECO:0000313|EMBL:ACU62504.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_101710_133
unknown

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comp(153856..154380)
DNA (525bp) protein (175aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_134
unknown

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comp(154519..155070)
DNA (552bp) protein (184aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_135
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

155374..156426
DNA (1053bp) protein (351aa)
Cobalt-zinc-cadmium resistance protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JNQ0_9BACT
Cobalt-zinc-cadmium resistance protein {ECO:0000313|EMBL:KGO92870.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
cation diffusion facilitator family transporter
berkeley_reactor_200306_planktonic_scaffold_101710_136
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(156432..156782)
DNA (351bp) protein (117aa)
transcriptional regulator n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B68805
Uncharacterized protein {ECO:0000313|EMBL:KEQ29115.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
HxlR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_101710_137
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

156857..157312
DNA (456bp) protein (152aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6CRV3_PAESJ
Uncharacterized protein {ECO:0000313|EMBL:KEQ29114.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
glyoxalase
berkeley_reactor_200306_planktonic_scaffold_101710_138
R_Gammaproteobacteria_37_14, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

157395..158327
DNA (933bp) protein (311aa)
Polysaccharide deacetylase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IVP5_KORVE
polysaccharide deacetylase
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_37_14_curated
berkeley_reactor_200306_planktonic_scaffold_101710_139
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(158456..158839)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI000375A78D
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
berkeley_reactor_200306_planktonic_scaffold_101710_140
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

159006..159500
DNA (495bp) protein (165aa)
Acetyltransferase, N-acetylglutamate synthase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KTX6_SOLCM
acetyltransferase, N-acetylglutamate synthase
Acetyltransferase, N-acetylglutamate synthase {ECO:0000313|EMBL:AFD06826.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
berkeley_reactor_200306_planktonic_scaffold_101710_141
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

159502..159984
DNA (483bp) protein (161aa)
Transcriptional regulator n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KTX7_SOLCM
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AFD06827.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
berkeley_reactor_200306_planktonic_scaffold_101710_142
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(160046..160570)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PMY2_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU60416.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_101710_143
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(160697..161029)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VK64_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EFK58666.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_101710_144
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(161053..165642)
DNA (4590bp) protein (1530aa)
RHS repeat-associated core domain protein containing protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J2T839_9FLAO
RHS repeat-associated core domain protein containing protein {ECO:0000313|EMBL:EJL74242.1}; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
Rhs family protein
berkeley_reactor_200306_planktonic_scaffold_101710_145
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(165654..166916)
DNA (1263bp) protein (421aa)
Tetratricopeptide repeat protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W4Y6_9FLAO
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EFK35175.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
berkeley_reactor_200306_planktonic_scaffold_101710_146
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(166950..169100)
DNA (2151bp) protein (717aa)
Rhs element Vgr protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W4Y7_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:GAE65814.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
Vgr family protein
berkeley_reactor_200306_planktonic_scaffold_101710_147
unknown

Not on your lists

comp(169152..169277)
DNA (126bp) protein (42aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_101710_148
Bacteroides coprophilus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(169354..169776)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Prevotella oris F0302 RepID=D1QPP1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF78355.1}; Flags: Fragment;; TaxID=547042 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides coprophilus DSM 18228 = JCM 13818.;"
hypothetical protein
Displaying items 121-150 of 184 in total

View Taxonomy