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berkeley_reactor_200306_planktonic_scaffold_101710_167

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: 188969..189547

Top 3 Functional Annotations

Value Algorithm Source
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.7
  • Coverage: 192.0
  • Bit_score: 293
  • Evalue 1.50e-76
Peptide deformylase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PB28_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 67.7
  • Coverage: 192.0
  • Bit_score: 293
  • Evalue 1.10e-76
peptide deformylase similarity KEGG
DB: KEGG
  • Identity: 67.7
  • Coverage: 192.0
  • Bit_score: 293
  • Evalue 3.00e-77

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Taxonomy

Chitinophaga pinensis → Chitinophaga → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 579
ATGATTTTACCAATTGTAGCTTATGGCCACCCGGTTTTGCGTAAGGTATGTGAGGATATAAGCAAAGACTACCCGGAGCTGGAAAAGCTGATTGCCGATATGTGGGAAACGATGTACCATACCAATGGGGTAGGGATCGCAGCGCCGCAGATCAATAAACCGGTACGTATATTCGTTATCGACACGGTGCAGATCGTGGAAGGTTTCGACGAGGAAGATAAAAAAGAATATCCCAACGAGCAACCGGTAAAGAAAGTATTTATCAATGCCCATACCGTAGCCACCGGTGGTAAGGACTGGGCCTATAACGAAGGCTGCCTCAGCATACCCAAAGTAAGGGAGGATGTAGTACGTCCCGGTGAAATTACCCTGCGCTATCTCGACGAAAATTTCGTGGAGCAGGAGGAAACCTTTTCGGGCATTACCGGCAGGGTTATCATGCACGAGTACGACCATATCGAAGGCAAGCTGTTTATCGACTACCTGGCGCCACTCAAAAAACGCCTGTTGAAGAAAAAGCTGGAAGATATTTCGAAAGGTAAGGTACGGGTCGACTACCGGATGATGCTGCCTAAATAG
PROTEIN sequence
Length: 193
MILPIVAYGHPVLRKVCEDISKDYPELEKLIADMWETMYHTNGVGIAAPQINKPVRIFVIDTVQIVEGFDEEDKKEYPNEQPVKKVFINAHTVATGGKDWAYNEGCLSIPKVREDVVRPGEITLRYLDENFVEQEETFSGITGRVIMHEYDHIEGKLFIDYLAPLKKRLLKKKLEDISKGKVRVDYRMMLPK*