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berkeley_reactor_200306_planktonic_scaffold_164454_4

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: 1710..2324

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=1 Tax=Dyadobacter beijingensis RepID=UPI000382E4D3 similarity UNIREF
DB: UNIREF100
  • Identity: 60.6
  • Coverage: 175.0
  • Bit_score: 217
  • Evalue 7.90e-54
RNA polymerase sigma-70 factor, Bacteroides expansion family 1 similarity KEGG
DB: KEGG
  • Identity: 57.8
  • Coverage: 173.0
  • Bit_score: 213
  • Evalue 4.20e-53
RNA polymerase sigma-70 factor, Bacteroides expansion family 1 {ECO:0000313|EMBL:AFD07266.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 57.8
  • Coverage: 173.0
  • Bit_score: 213
  • Evalue 2.10e-52

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Taxonomy

Solitalea canadensis → Solitalea → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 615
ATGCAAACTTTGGAACAAGCGAGTACCTTTGAAGGGCAAAGCCATTTATTGCACATGGAAATAAATACTACCGGGATTACAACGACCGAATTTGAAAGGATTTTTAAGGCCCATTTCAAGCCCTTGCATGCCTATGCCTGCACGATCCTGAGAGAAGAGGCTATGGCGGAAGAGATGGTACAGCAAGTCTTTTACAAACTGTGGGAGAAAAGAGAACAGGTGATTATCAACCAGTCGGCAAGCGCCTACCTGTACCGCTCTGTTTATAATGAATGTTTAAATTATCTGAAACATCAAAAGGTGAAACAGGCACATCAGCATCATACGCGGCATACGGCCGAAGAAGCATCGGAACATGCTTCAAAGAAAATTATTGCCAAAGAGCTGGAAGCGAAAATTGCAGACGCGCTGACCCAGCTGCCCGAACAATGCCGTACTATTTTCCAGATGAGCCGCTTTGAAGAACTGAAATACCGGGAGATCGCACAAAGGCTTAACCTTTCTGTGAAAACGATCGAAAACCAGATGGGCAAGGCATTGAAGATTATGCGGATGCAACTGGCAGAATACCTGCCCCTGGTACTGGTGGGCTTACTGCATTTATTAAACTCCTGA
PROTEIN sequence
Length: 205
MQTLEQASTFEGQSHLLHMEINTTGITTTEFERIFKAHFKPLHAYACTILREEAMAEEMVQQVFYKLWEKREQVIINQSASAYLYRSVYNECLNYLKHQKVKQAHQHHTRHTAEEASEHASKKIIAKELEAKIADALTQLPEQCRTIFQMSRFEELKYREIAQRLNLSVKTIENQMGKALKIMRMQLAEYLPLVLVGLLHLLNS*