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berkeley_reactor_200306_planktonic_scaffold_164454

Search features with annotation key words

Displaying items 1-30 of 191 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_164454_1
unknown

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3..119
DNA (117bp) protein (39aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_164454_2
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(275..1036)
DNA (762bp) protein (254aa)
Geranylgeranylglyceryl phosphate synthase {ECO:0000313|EMBL:ACU57872.1}; EC=2.5.1.41 {ECO:0000313|EMBL:ACU57872.1};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Geranylgeranylglyceryl phosphate synthase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PEQ0_CHIPD
geranylgeranylglyceryl phosphate synthase
berkeley_reactor_200306_planktonic_scaffold_164454_3
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1098..1529)
DNA (432bp) protein (144aa)
Large-conductance mechanosensitive channel n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XTW5_PEDHD
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
large conductance mechanosensitive channel protein
berkeley_reactor_200306_planktonic_scaffold_164454_4
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1710..2324
DNA (615bp) protein (205aa)
RNA polymerase subunit sigma-24 n=1 Tax=Dyadobacter beijingensis RepID=UPI000382E4D3
RNA polymerase sigma-70 factor, Bacteroides expansion family 1
RNA polymerase sigma-70 factor, Bacteroides expansion family 1 {ECO:0000313|EMBL:AFD07266.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
berkeley_reactor_200306_planktonic_scaffold_164454_5
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

2391..3365
DNA (975bp) protein (325aa)
Anti-FecI sigma factor, FecR n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VWU9_DYAFD
FecR anti-FecI sigma factor
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:ACT96849.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
berkeley_reactor_200306_planktonic_scaffold_164454_6
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3571..5367
DNA (1797bp) protein (599aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PCQ2_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU61401.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_164454_7
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5423..6652
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SE75_PEDSD
Contig83, whole genome shotgun sequence {ECO:0000313|EMBL:KIO75782.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_164454_8
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6783..7496
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036BAE21
Uncharacterized protein {ECO:0000313|EMBL:KIC93458.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_164454_9
unknown

Not on your lists

7631..7996
DNA (366bp) protein (122aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_164454_10
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8674..9690
DNA (1017bp) protein (339aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ELK6_RUNSL
UDP-N-acetylenolpyruvoylglucosamine reductase
berkeley_reactor_200306_planktonic_scaffold_164454_11
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9900..12206
DNA (2307bp) protein (769aa)
TonB-dependent receptor n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PJQ2_CHIPD
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ACU63812.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_164454_12
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12246..13052
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037D7930
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ26107.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_164454_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13154..14206)
DNA (1053bp) protein (351aa)
Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000256|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000256|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan oxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan pyrrolase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophanase {ECO:0000256|HAMAP-Rule:MF_01972}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
hypothetical protein n=1 Tax=Vitreoscilla stercoraria RepID=UPI000365ED94
tryptophan 23-dioxygenase
berkeley_reactor_200306_planktonic_scaffold_164454_14
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14253..15974)
DNA (1722bp) protein (574aa)
ABC-type uncharacterized transport system involved in gliding motility auxiliary component n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PDA9_CHIPD
ABC transporter
ABC-type uncharacterized transport system involved in gliding motility auxiliary component {ECO:0000313|EMBL:ACU57732.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_164454_15
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(16054..16674)
DNA (621bp) protein (207aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XT48_PEDHD
phosphatase
Phosphatase {ECO:0000313|EMBL:AKD04233.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
berkeley_reactor_200306_planktonic_scaffold_164454_16
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16686..17777)
DNA (1092bp) protein (364aa)
UPF0176 protein D781_1797 n=1 Tax=Serratia marcescens FGI94 RepID=L0MDT3_SERMA
rhodanese-like protein
UPF0176 protein SM39_1355 {ECO:0000256|HAMAP-Rule:MF_00469}; TaxID=1334564 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens SM39.;"
berkeley_reactor_200306_planktonic_scaffold_164454_17
unknown

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17810..17941
DNA (132bp) protein (44aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_164454_18
unknown

Not on your lists

18297..19070
DNA (774bp) protein (258aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_164454_19
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(19219..20208)
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Geminocystis herdmanii RepID=UPI000348CB08
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
berkeley_reactor_200306_planktonic_scaffold_164454_20
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20427..21233)
DNA (807bp) protein (269aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIB1_FLUTR
alkyl hydroperoxide reductase
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
berkeley_reactor_200306_planktonic_scaffold_164454_21
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21451..22284
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSX4_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU59013.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_164454_22
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22239..23324)
DNA (1086bp) protein (362aa)
Putative uncharacterized protein id=1891083 bin=GWD2_Bacteroidetes_40_43 species=Tannerella sp. 6_1_58FAA_CT1 genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
3-deoxy-D-manno-octulosonic-acid transferase
Tax=GWE2_Bacteroidetes_40_63_curated
berkeley_reactor_200306_planktonic_scaffold_164454_23
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23517..24293)
DNA (777bp) protein (259aa)
Metal-dependent hydrolase, beta-lactamase superfamily I n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KPM3_SOLCM
beta-lactamase superfamily metal-dependent hydrolase
Metal-dependent hydrolase, beta-lactamase superfamily I {ECO:0000313|EMBL:AFD05921.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
berkeley_reactor_200306_planktonic_scaffold_164454_24
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24296..24604)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQ92_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU58781.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_164454_25
unknown

Not on your lists

24691..25422
DNA (732bp) protein (244aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_164454_26
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(25500..30620)
DNA (5121bp) protein (1707aa)
Putative DNA helicase n=1 Tax=Cesiribacter andamanensis AMV16 RepID=M7MYM4_9BACT
DNA helicase
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
berkeley_reactor_200306_planktonic_scaffold_164454_27
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30620..31762)
DNA (1143bp) protein (381aa)
Peptidase M48 Ste24p n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIY6_NIAKG
peptidase M48 Ste24p
Peptidase M48 Ste24p {ECO:0000313|EMBL:AEV97503.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_164454_28
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

32004..34025
DNA (2022bp) protein (674aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000380677D
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
berkeley_reactor_200306_planktonic_scaffold_164454_29
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

34169..34564
DNA (396bp) protein (132aa)
Nuclear protein SET n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPC7_NIAKG
Lysine methyltransferase {ECO:0000313|EMBL:KIC89363.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
nuclear protein SET
berkeley_reactor_200306_planktonic_scaffold_164454_30
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

34580..35251
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003827922
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT96294.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
Displaying items 1-30 of 191 in total

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