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berkeley_reactor_200306_planktonic_scaffold_164454

Search features with annotation key words

Displaying items 121-150 of 191 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_164454_116
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

124970..126010
DNA (1041bp) protein (347aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
histidinol-phosphate aminotransferase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B78BB0
histidinol-phosphate aminotransferase
berkeley_reactor_200306_planktonic_scaffold_164454_117
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

126007..127104
DNA (1098bp) protein (366aa)
Histidinol-phosphatase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W3D7_9FLAO
Histidine biosynthesis bifunctional protein HisB {ECO:0000256|SAAS:SAAS00082593}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
imidazole glycerol-phosphate dehydratase/histidinol phosphatase
berkeley_reactor_200306_planktonic_scaffold_164454_118
Bacteroides sp. CAG:661, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

127120..127701
DNA (582bp) protein (194aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1262746 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:661.;"
imidazole glycerol phosphate synthase subunit HisH (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Bacteroides sp. CAG:661 RepID=R5SPJ7_9BACE
berkeley_reactor_200306_planktonic_scaffold_164454_119
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

127698..128441
DNA (744bp) protein (248aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036CD8F3
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
berkeley_reactor_200306_planktonic_scaffold_164454_120
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

128438..129196
DNA (759bp) protein (253aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
imidazole glycerol phosphate synthase n=1 Tax=Segetibacter koreensis RepID=UPI00036CDF63
Imidazole glycerol phosphate synthase cyclase subunit
berkeley_reactor_200306_planktonic_scaffold_164454_121
Marivirga tractuosa, Marivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

129204..129830
DNA (627bp) protein (209aa)
phosphoribosyl-AMP cyclohydrolase n=1 Tax=Niabella aurantiaca RepID=UPI00036B51CD
phosphoribosyl-ATP diphosphatase
Histidine biosynthesis bifunctional protein HisIE {ECO:0000256|HAMAP-Rule:MF_01019, ECO:0000256|SAAS:SAAS00015509}; TaxID=643867 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Marivirga.;" source="Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB; 1408 / VKM B-1430 / H-43) (Microscilla tractuosa) (Flexibacter; tractuosus).;"
berkeley_reactor_200306_planktonic_scaffold_164454_122
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(129820..130830)
DNA (1011bp) protein (337aa)
Muconate cycloisomerase {ECO:0000313|EMBL:AEV98901.1}; EC=5.5.1.1 {ECO:0000313|EMBL:AEV98901.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000378EBE5
Muconate cycloisomerase
berkeley_reactor_200306_planktonic_scaffold_164454_123
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

130939..131646
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PHB2_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:KIC94834.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_164454_124
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(131747..132967)
DNA (1221bp) protein (407aa)
Beta-ketoacyl synthase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PAX9_CHIPD
beta-ketoacyl synthase
Beta-ketoacyl synthase {ECO:0000313|EMBL:ACU59351.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_164454_125
GWF2_Bacteroidetes_33_38_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(133033..134280)
DNA (1248bp) protein (416aa)
ABC-type antimicrobial peptide transport system, permease component id=4190457 bin=GWF2_Bacteroidetes_33_38 species=Owenweeksia hongkongensis genus=Owenweeksia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
ABC transporter
Tax=GWF2_Bacteroidetes_33_38_curated
berkeley_reactor_200306_planktonic_scaffold_164454_126
CG_Ignavi_01, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(134340..134867)
DNA (528bp) protein (176aa)
OmpA/MotB domain protein n=1 Tax=Prosthecochloris aestuarii (strain DSM 271 / SK 413) RepID=B4S8X2_PROA2
OmpA/MotB domain-containing protein
Tax=CG_Ignavi_01
berkeley_reactor_200306_planktonic_scaffold_164454_127
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(134907..135599)
DNA (693bp) protein (231aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PP43_CHIPD
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ACU58740.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_164454_128
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(135610..136878)
DNA (1269bp) protein (423aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
Sensor protein RprX n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZV02_9BACT
integral membrane sensor signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_164454_129
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(136961..137701)
DNA (741bp) protein (247aa)
Alpha/beta hydrolase fold protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRA0_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:KIC93231.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
alpha/beta hydrolase
berkeley_reactor_200306_planktonic_scaffold_164454_130
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(137724..138944)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NNR2_9SPHI
membrane protein
Membrane protein {ECO:0000313|EMBL:AHF15211.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_164454_131
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(138983..139456)
DNA (474bp) protein (158aa)
GAF domain-containing protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NLN7_9SPHI
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:AHF14583.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_164454_132
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

139619..140005
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TKV8_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV99787.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_164454_133
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

140070..140663
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NR19_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF17962.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_164454_134
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

140685..141710
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000369C33B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF17961.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_164454_135
Pontibacter sp. BAB1700, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

141735..142562
DNA (828bp) protein (276aa)
short-chain dehydrogenase n=1 Tax=Pontibacter roseus RepID=UPI0003714EA3
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:EJF10899.1}; TaxID=1144253 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
short-chain dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_164454_136
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

142650..143306
DNA (657bp) protein (219aa)
Shikimate dehydrogenase substrate binding domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUC7_CHIPD
shikimate dehydrogenase
Shikimate dehydrogenase substrate binding domain protein {ECO:0000313|EMBL:ACU59167.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_164454_137
Mariniradius saccharolyticus, Mariniradius, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

143396..143734
DNA (339bp) protein (113aa)
Transcriptional regulator, PadR family n=1 Tax=Mariniradius saccharolyticus AK6 RepID=M7XHX5_9BACT
Transcriptional regulator, PadR family {ECO:0000313|EMBL:EMS34163.1}; TaxID=1239962 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Mariniradius.;" source="Mariniradius saccharolyticus AK6.;"
putative transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_164454_138
unknown

Not on your lists

143750..144019
DNA (270bp) protein (90aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_164454_139
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

144016..144669
DNA (654bp) protein (218aa)
Alpha/beta hydrolase family protein n=3 Tax=Leptospira weilii RepID=M6G773_9LEPT
Uncharacterized protein {ECO:0000313|EMBL:GAO45569.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_164454_140
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

144762..147326
DNA (2565bp) protein (855aa)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000313|EMBL:ACU60577.1}; EC=5.99.1.3 {ECO:0000313|EMBL:ACU60577.1};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PPE1_CHIPD
DNA topoisomerase IV subunit A
berkeley_reactor_200306_planktonic_scaffold_164454_141
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

147479..148081
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003682E04
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF14777.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_164454_142
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(148187..148687)
DNA (501bp) protein (167aa)
GCN5-related N-acetyltransferase n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RVE1_LEAB4
gcn5-related N-acetyltransferase
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADQ16127.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
berkeley_reactor_200306_planktonic_scaffold_164454_143
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

148941..149786
DNA (846bp) protein (282aa)
BAAT/Acyl-CoA thioester hydrolase n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L3G2_HALH1
BAAT/acyl-CoA thioester hydrolase
BAAT/Acyl-CoA thioester hydrolase {ECO:0000313|EMBL:AEE52939.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
berkeley_reactor_200306_planktonic_scaffold_164454_144
unknown

Not on your lists

comp(149873..150253)
DNA (381bp) protein (127aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_164454_145
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(150497..151807)
DNA (1311bp) protein (437aa)
Putative hemolysin secretion transport system membrane protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JPB4_9BACT
hypothetical protein
Tax=GWF2_Bacteroidetes_35_48_curated
Displaying items 121-150 of 191 in total

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