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berkeley_reactor_200306_planktonic_scaffold_164454

Search features with annotation key words

Displaying items 61-90 of 191 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_164454_57
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

59524..59805
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PH94_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU58073.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_164454_58
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(59857..61281)
DNA (1425bp) protein (475aa)
MATE efflux family protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XVJ3_PEDHD
Multidrug transporter MatE {ECO:0000313|EMBL:ETZ22871.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
MATE efflux family protein
berkeley_reactor_200306_planktonic_scaffold_164454_59
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(61590..62501)
DNA (912bp) protein (304aa)
WYL superfamily protein id=4035720 bin=GWF2_Bacteroidetes_40_13 species=Psychroflexus torquis genus=Psychroflexus taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
WYL superfamily protein
Tax=GWE2_Bacteroidetes_40_63_curated
berkeley_reactor_200306_planktonic_scaffold_164454_60
unknown

Not on your lists

62799..63119
DNA (321bp) protein (107aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_164454_61
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

63531..64616
DNA (1086bp) protein (362aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VVV1_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT91407.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
berkeley_reactor_200306_planktonic_scaffold_164454_62
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

64904..65983
DNA (1080bp) protein (360aa)
AAA ATPase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TK21_NIAKG
AAA ATPase
AAA ATPase {ECO:0000313|EMBL:AEW02959.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_164454_63
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

66096..66956
DNA (861bp) protein (287aa)
MscS Mechanosensitive ion channel n=1 Tax=Niabella soli DSM 19437 RepID=H1NKW8_9SPHI
mechanosensitive ion channel protein
Mechanosensitive ion channel protein {ECO:0000313|EMBL:AHF14385.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_164454_64
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(67068..67277)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PG30_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU58013.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_164454_65
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(67301..68254)
DNA (954bp) protein (318aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Methylenetetrahydrofolate reductase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PK24_CHIPD
methylenetetrahydrofolate reductase
berkeley_reactor_200306_planktonic_scaffold_164454_66
unknown

Not on your lists

comp(68453..68716)
DNA (264bp) protein (88aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_164454_67
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(68785..69759)
DNA (975bp) protein (325aa)
Transcriptional regulator n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KLW7_SOLCM
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AFD08695.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
berkeley_reactor_200306_planktonic_scaffold_164454_68
Myroides odoratus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

69856..70839
DNA (984bp) protein (328aa)
Aldo/keto reductase n=2 Tax=Myroides RepID=H1ZDS2_MYROD
Aldo/keto reductase {ECO:0000313|EMBL:EHQ44174.1}; TaxID=929704 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides odoratus DSM 2801.;"
aldo/keto reductase
berkeley_reactor_200306_planktonic_scaffold_164454_69
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70992..71300
DNA (309bp) protein (103aa)
N-ethylmaleimide reductase n=1 Tax=Serratia marcescens RepID=UPI00030DAE88
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGE15939.1}; TaxID=435998 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens WW4.;"
berkeley_reactor_200306_planktonic_scaffold_164454_70
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

71258..72022
DNA (765bp) protein (255aa)
NADH:flavin oxidoreductase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KLW5_SOLCM
NADH:flavin oxidoreductase
NADH:flavin oxidoreductase {ECO:0000313|EMBL:AFD08693.1}; Flags: Precursor;; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
berkeley_reactor_200306_planktonic_scaffold_164454_71
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

72091..73215
DNA (1125bp) protein (375aa)
NADH:flavin oxidoreductase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KLW4_SOLCM
NADH:flavin oxidoreductase {ECO:0000313|EMBL:KIC91306.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
N-ethylmaleimide reductase
berkeley_reactor_200306_planktonic_scaffold_164454_72
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

73255..74004
DNA (750bp) protein (250aa)
Putative intracellular protease/amidase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KLW3_SOLCM
putative intracellular protease/amidase
Putative intracellular protease/amidase {ECO:0000313|EMBL:AFD08691.1}; Flags: Precursor;; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
berkeley_reactor_200306_planktonic_scaffold_164454_73
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(74082..75398)
DNA (1317bp) protein (439aa)
Metabolite/H+ symporter, major facilitator superfamily (MFS) n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XSM4_PEDHD
Contig54, whole genome shotgun sequence {ECO:0000313|EMBL:KIO76821.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
metabolite/H+ symporter, major facilitator superfamily (MFS)
berkeley_reactor_200306_planktonic_scaffold_164454_74
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

75528..76103
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FVY4_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EEI92976.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_164454_75
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(76118..76918)
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037A3FD8
AraC family transcriptional regulator
AraC family transcriptional regulator {ECO:0000313|EMBL:AKD55781.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
berkeley_reactor_200306_planktonic_scaffold_164454_76
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(77006..77896)
DNA (891bp) protein (297aa)
oxidoreductase n=1 Tax=Dyadobacter beijingensis RepID=UPI00036839DB
Putative short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EDM36118.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_planktonic_scaffold_164454_77
unknown

Not on your lists

78075..78569
DNA (495bp) protein (165aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_164454_78
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(78547..79185)
DNA (639bp) protein (213aa)
Acetyltransferase, GNAT family n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VRY2_9SPHI
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EFK56533.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
GNAT family acetyltransferase
berkeley_reactor_200306_planktonic_scaffold_164454_79
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(79200..80669)
DNA (1470bp) protein (490aa)
Putative transcriptional regulator, GntR family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKE8_CHIPD
GntR family transcriptional regulator
Putative transcriptional regulator, GntR family {ECO:0000313|EMBL:ACU60234.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_164454_80
Flavobacterium hydatis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

80921..81325
DNA (405bp) protein (135aa)
DoxX family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TD53_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KFF15823.1}; TaxID=991 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hydatis (Cytophaga aquatilis).;"
DoxX family protein
berkeley_reactor_200306_planktonic_scaffold_164454_81
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

81485..82105
DNA (621bp) protein (207aa)
FMN-dependent NADH-azoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; EC=1.7.-.- {ECO:0000256|HAMAP-Rule:MF_01216};; Azo-dye reductase {ECO:0000256|HAMAP-Rule:MF_01216}; FMN-dependent NADH-azo compound oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
FMN-dependent NADH-azoreductase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKF0_CHIPD
NAD(P)H dehydrogenase (quinone)
berkeley_reactor_200306_planktonic_scaffold_164454_82
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

82183..82635
DNA (453bp) protein (151aa)
GCN5-related N-acetyltransferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKF1_CHIPD
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ACU60237.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_164454_83
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

82725..83396
DNA (672bp) protein (224aa)
Succinate dehydrogenase (Or fumarate reductase) cytochrome b subunit, b558 family n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C7P8_SPHS2
succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family
Succinate dehydrogenase (Or fumarate reductase) cytochrome b subunit, b558 family {ECO:0000313|EMBL:ADZ81381.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
berkeley_reactor_200306_planktonic_scaffold_164454_84
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

83695..86055
DNA (2361bp) protein (787aa)
Peptidase domain protein n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2QX58_PIRSD
peptidase domain-containing protein
Peptidase domain protein {ECO:0000313|EMBL:ADB17898.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
berkeley_reactor_200306_planktonic_scaffold_164454_85
unknown

Not on your lists

comp(86161..87993)
DNA (1833bp) protein (611aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_164454_86
unknown

Not on your lists

88418..88786
DNA (369bp) protein (123aa)

This feature has no annotations

Displaying items 61-90 of 191 in total

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